RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA396510", tax_phylum = "Thermodesulfobacteriota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA396510 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15106872 15106872 PRJNA396510_P_NODE_14332_length_165_cov_0.879310_g14263_i0 PRJNA396510 14332 165 0.87931 1.4508615 Candidatus Mycalebacterium 3096684 Bacteria Bacteria 198 1.67e-46   NTclustered gi|2575803239|emb|OY729416.1| 2202153 g14263 i0 88.485 177.315151515152 165 18 100 1 1 165 76791 76954 MAG: Thermodesulfobacteriota bacterium isolate ba02c5ff-97d3-4768-ae28-618c4039653d genome assembly, chromosome: 1 blastn 29257 200 0.99 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
31212384 31212384 PRJNA396510_P_NODE_2135_length_369_cov_1.515625_g2066_i0 PRJNA396510 2135 369 1.515625 5.59265625 Pelovirga sp. 2913515 Bacteria Bacteria 44.3 0.0401   NR MFO7767261.1 2913515 g2066 i0 29.5 0.634146341463415 78 52 61 1 56 280 386 463 MFO7767261.1 asparagine--tRNA ligase [Pelovirga sp.] diamond 234 44.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Pelovirga Pelovirga sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;