RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA396510" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA396510 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27486195 27486195 PRJNA396510_P_NODE_9203_length_198_cov_1.026846_g9134_i0 PRJNA396510 9203 198 1.026846 2.03315508 Thermoguttaceae bacterium 2691551 Bacteria Bacteria 43.1 0.0144   NR MDD4267300.1 2691551 g9134 i0 35.6 1.10606060606061 73 38 97 2 196 5 32 104 MDD4267300.1 sugar phosphate isomerase/epimerase [Thermoguttaceae bacterium] diamond 219 43.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Thermoguttaceae   Thermoguttaceae bacterium
27896515 27896515 PRJNA396510_P_NODE_14225_length_165_cov_0.879310_g14156_i0 PRJNA396510 14225 165 0.87931 1.4508615 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 45.1 0.00204   NR MEX0715682.1 2026779 g14156 i0 54.8 0.763636363636364 42 17 76.4 1 1 126 320 359 MEX0715682.1 serine/threonine-protein kinase [Planctomycetaceae bacterium] diamond 126 45.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;