RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA395690" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA395690 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10615727 10615727 PRJNA395690_P_NODE_6509_length_315_cov_6.646617_g6357_i0 PRJNA395690 6509 315 6.646617 20.93684355 Meloidogyne enterolobii 390850 Nematoda Nematoda 100 1.05e-25   NR CAD2132787.1 390850 g6357 i0 82.1 0.533333333333333 56 10 53.3 0 284 117 1 56 CAD2132787.1 unnamed protein product [Meloidogyne enterolobii] diamond 168 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
16989229 16989229 PRJNA395690_P_NODE_35514_length_161_cov_1.366071_g35362_i0 PRJNA395690 35514 161 1.366071 2.19937431 Mesorhabditis spiculigera 96644 Nematoda Nematoda 98.2 3.58e-22   NR CAJ0582299.1 96644 g35362 i0 82.7 5.77639751552795 52 9 96.9 0 4 159 210 261 CAJ0582299.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 930 98.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
27154915 27154915 PRJNA395690_P_NODE_32862_length_163_cov_1.789474_g32710_i0 PRJNA395690 32862 163 1.789474 2.91684262 Metazoa 33208 Nematoda Nematoda 44.3 0.00369   NR EFP13371.1 31234 g32710 i0 41.2 4.98773006134969 51 28 90.2 1 147 1 271 321 EFP13371.1 CRE-EMB-4 protein [Caenorhabditis remanei] diamond 813 44.7 0.991051454138702 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
28197397 28197397 PRJNA395690_P_NODE_22246_length_181_cov_1.545455_g22094_i0 PRJNA395690 22246 181 1.545455 2.79727355 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 85.5 2.67e-19   NR KAF8372912.1 54126 g22094 i0 66.1 2.90055248618785 59 20 97.8 0 179 3 33 91 KAF8372912.1 rps-18 [Pristionchus pacificus] diamond 525 86.3 0.990730011587486 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
29949058 29949058 PRJNA395690_P_NODE_7331_length_298_cov_1.228916_g7179_i0 PRJNA395690 7331 298 1.228916 3.66216968 Heterodera trifolii 157864 Nematoda Nematoda 93.6 2.24e-20   NR KAL3073343.1 157864 g7179 i0 48.5 0.996644295302013 99 51 99.7 0 298 2 153 251 KAL3073343.1 hypothetical protein niasHT_038700 [Heterodera trifolii] diamond 297 93.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
31197552 31197552 PRJNA395690_P_NODE_9495_length_264_cov_1.320930_g9343_i0 PRJNA395690 9495 264 1.32093 3.4872552 Metazoa 33208 Nematoda Nematoda 47 5.94e-4   NR KAH7723331.1 70226 g9343 i0 67.6 1.51136363636364 34 11 38.6 0 161 262 30 63 KAH7723331.1 60S ribosomal protein L23a [Aphelenchoides avenae] diamond 399 47 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;