RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA395690", tax_phylum = "Negarnaviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Negarnaviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA395690 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15106752 15106752 PRJNA395690_P_NODE_31512_length_165_cov_0.870690_g31360_i0 PRJNA395690 31512 165 0.87069 1.4366385 Alphainfluenzavirus 197911 Viruses Viruses 300 4.46e-77   NTclustered gi|1861691401|gb|MT667232.1| 11320 g31360 i0 99.394 99.9818181818182 165 1 100 0 1 165 695 531 Influenza A virus (A/swine/Denmark/2015_05755_1p1/2015(H3N2)) segment 7 matrix protein 2 (M2) gene, partial cds; and matrix protein 1 (M1) gene, complete cds blastn 16497 300 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
28797216 28797216 PRJNA395690_P_NODE_2987_length_453_cov_1.581683_g2838_i0 PRJNA395690 2987 453 1.581683 7.16502399 Chuvivirus 2842604 Viruses Viruses 190 3.959999999999999e-55   NR WET19887.1 2842604 g2838 i0 62 1.98675496688742 150 57 99.3 0 4 453 243 392 WET19887.1 MAG: nucleoprotein [Freshwater turtle neural virus 1] diamond 900 190 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Chuvivirus Chuvivirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;