RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA395690" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA395690 · 9 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15714355 15714355 PRJNA395690_P_NODE_2753_length_471_cov_4.042654_g2605_i0 PRJNA395690 2753 471 4.042654 19.04090034 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 231 7.92e-74   NR CEP01968.1 37360 g2605 i0 71.6 5.95541401273885 155 43 98.7 1 5 469 7 160 CEP01968.1 hypothetical protein PBRA_002233 [Plasmodiophora brassicae] diamond 2805 231 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
23363888 23363888 PRJNA395690_P_NODE_4139_length_388_cov_2.115044_g3990_i0 PRJNA395690 4139 388 2.115044 8.20637072 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 145 1.6e-40   NR CEP00157.1 37360 g3990 i0 64.3 8.90721649484536 129 45 99.7 1 2 388 96 223 CEP00157.1 hypothetical protein PBRA_007891 [Plasmodiophora brassicae] diamond 3456 145 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
24638254 24638254 PRJNA395690_P_NODE_9300_length_267_cov_1.169725_g9148_i0 PRJNA395690 9300 267 1.169725 3.12316575 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 155 2.7e-46   NR CEO97530.1 37360 g9148 i0 86.4 0.98876404494382 88 12 98.9 0 265 2 45 132 CEO97530.1 hypothetical protein PBRA_000875 [Plasmodiophora brassicae] diamond 264 155 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
26854090 26854090 PRJNA395690_P_NODE_35621_length_161_cov_0.910714_g35469_i0 PRJNA395690 35621 161 0.910714 1.46624954 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 45.8 7.2e-4   NR CEP03344.1 37360 g35469 i0 74.1 0.503105590062112 27 7 50.3 0 156 76 166 192 CEP03344.1 hypothetical protein PBRA_003104 [Plasmodiophora brassicae] diamond 81 45.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27580794 27580794 PRJNA395690_P_NODE_2864_length_462_cov_2.094431_g2716_i0 PRJNA395690 2864 462 2.094431 9.67627122 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 122 1.83e-32   NR CEP02737.1 37360 g2716 i0 65.1 0.558441558441558 86 30 55.8 0 460 203 64 149 CEP02737.1 hypothetical protein PBRA_002705 [Plasmodiophora brassicae] diamond 258 122 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28386937 28386937 PRJNA395690_P_NODE_3486_length_421_cov_1.470430_g3337_i0 PRJNA395690 3486 421 1.47043 6.1905103 Plasmodiophorida 37357 SAR_Eukaryotes SAR_Eukaryotes 128 7.66e-35   NR CEP02236.1 37360 g3337 i0 52.9 2.5083135391924 119 56 84.8 0 15 371 1 119 CEP02236.1 hypothetical protein PBRA_002501 [Plasmodiophora brassicae] diamond 1056 128 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31750338 31750338 PRJNA395690_P_NODE_14297_length_215_cov_1.500000_g14145_i0 PRJNA395690 14297 215 1.5 3.225 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 99.4 1.4999999999999998e-24   NR CEO96284.1 37360 g14145 i0 71.2 1.85581395348837 66 19 92.1 0 13 210 1 66 CEO96284.1 hypothetical protein PBRA_004955 [Plasmodiophora brassicae] diamond 399 99.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32510115 32510115 PRJNA395690_P_NODE_28959_length_167_cov_0.864407_g28807_i0 PRJNA395690 28959 167 0.864407 1.44355969 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 63.9 4.07e-10   NR CEP03566.1 37360 g28807 i0 49.1 0.988023952095808 55 28 98.8 0 3 167 221 275 CEP03566.1 hypothetical protein PBRA_009451 [Plasmodiophora brassicae] diamond 165 63.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32667454 32667454 PRJNA395690_P_NODE_7920_length_287_cov_1.285714_g7768_i0 PRJNA395690 7920 287 1.285714 3.68999918 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 69.7 4.83e-13   NR CEP02593.1 37360 g7768 i0 62.7 0.533101045296167 51 19 53.3 0 5 157 52 102 CEP02593.1 hypothetical protein PBRA_002561 [Plasmodiophora brassicae] diamond 153 69.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;