contig_metadata
6 rows where bioproject = "PRJNA395690" and tax_phylum = "Chlamydiota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1078949 | 1078949 | PRJNA395690_P_NODE_12101_length_234_cov_1.616216_g11949_i0 | PRJNA395690 | 12101 | 234 | 1.616216 | 3.78194544 | Chlamydiia | 204429 | Bacteria | Bacteria | 276 | 1.1399999999999999e-69 | NTclustered | gi|880804288|gb|KT263032.1| | 174324 | g11949 | i0 | 88.462 | 98.7735042735043 | 234 | 19 | 100 | 7 | 1 | 234 | 7 | 232 | Uncultured Chlamydiales bacterium clone SW210C 16S ribosomal RNA gene, partial sequence | blastn | 23113 | 276 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Chlamydiales | uncultured Chlamydiales bacterium | |||
| 1686432 | 1686432 | PRJNA395690_P_NODE_22602_length_180_cov_2.007634_g22450_i0 | PRJNA395690 | 22602 | 180 | 2.007634 | 3.6137412 | Waddlia malaysiensis | 219016 | Bacteria | Bacteria | 219 | 1.4199999999999999e-52 | NTclustered | gi|27903501|gb|AY184804.1| | 219016 | g22450 | i0 | 88.398 | 120.127777777778 | 181 | 19 | 100 | 2 | 1 | 180 | 2261 | 2082 | Waddlia sp. G817 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | blastn | 21623 | 219 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Waddliaceae | Waddlia | Waddlia malaysiensis | |
| 2962276 | 2962276 | PRJNA395690_P_NODE_17883_length_192_cov_1.692308_g17731_i0 | PRJNA395690 | 17883 | 192 | 1.692308 | 3.24923136 | uncultured Chlamydiales bacterium | 174324 | Bacteria | Bacteria | 239 | 1.18e-58 | NTclustered | gi|2874253688|emb|OY969414.1| | 174324 | g17731 | i0 | 89.231 | 49.5833333333333 | 195 | 15 | 100 | 5 | 1 | 192 | 2363977 | 2364168 | MAG: uncultured Chlamydiales bacterium isolate MFD04463.bin.c.14 genome assembly, chromosome: 1 | blastn | 9520 | 239 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Chlamydiales | uncultured Chlamydiales bacterium | |||
| 8064884 | 8064884 | PRJNA395690_P_NODE_18587_length_190_cov_1.148936_g18435_i0 | PRJNA395690 | 18587 | 190 | 1.148936 | 2.1829784 | Candidatus Protochlamydia amoebophila | 362787 | Bacteria | Bacteria | 254 | 4.17e-63 | NTclustered | gi|1691252667|emb|BX908798.2| | 264201 | g18435 | i0 | 91.005 | 61.9578947368421 | 189 | 16 | 99 | 1 | 2 | 189 | 1881689 | 1881877 | Candidatus Protochlamydia amoebophila UWE25 complete genome | blastn | 11772 | 254 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia amoebophila | |
| 18930567 | 18930567 | PRJNA395690_P_NODE_37155_length_153_cov_2.682692_g37002_i0 | PRJNA395690 | 37155 | 153 | 2.682692 | 4.10451876 | Candidatus Protochlamydia | 282132 | Bacteria | Bacteria | 244 | 1.93e-60 | NTclustered | gi|1691252667|emb|BX908798.2| | 264201 | g37002 | i0 | 95.425 | 53.437908496732 | 153 | 7 | 100 | 0 | 1 | 153 | 1249188 | 1249340 | Candidatus Protochlamydia amoebophila UWE25 complete genome | blastn | 8176 | 244 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia amoebophila | |
| 28166032 | 28166032 | PRJNA395690_P_NODE_21925_length_182_cov_1.503759_g21773_i0 | PRJNA395690 | 21925 | 182 | 1.503759 | 2.73684138 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 71.2 | 1.46e-12 | NR | WP_079992932.1 | 389348 | g21773 | i0 | 55.4 | 4.63186813186813 | 56 | 25 | 92.3 | 0 | 175 | 8 | 472 | 527 | WP_079992932.1 DEAD/DEAH box helicase [Candidatus Protochlamydia naegleriophila] | diamond | 843 | 71.6 | 0.994413407821229 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia naegleriophila |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;