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contig_metadata

22 rows where bioproject = "PRJNA395690", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 22 ✖

tax_kingdom 1

  • Pseudomonadati · 22 ✖

bioproject 1

  • PRJNA395690 · 22 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4238616 4238616 PRJNA395690_P_NODE_17224_length_195_cov_2.095890_g17072_i0 PRJNA395690 17224 195 2.09589 4.0869855 Labilithrix luteola 1391654 Bacteria Bacteria 272 1.19e-68   NTclustered gi|913610804|gb|CP012333.1| 1391654 g17072 i0 91.837 211.85641025641 196 14 100 2 1 195 3942281 3942087 Labilithrix luteola strain DSM 27648, complete genome blastn 41312 272 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
6789343 6789343 PRJNA395690_P_NODE_19846_length_187_cov_1.376812_g19694_i0 PRJNA395690 19846 187 1.376812 2.57463844 Polyangium aurulentum 2567896 Bacteria Bacteria 180 7.04e-41   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g19694 i0 85.227 0.941176470588235 176 24 94 2 1 175 11485869 11485695 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 176 180 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
8064834 8064834 PRJNA395690_P_NODE_1527_length_631_cov_33.216495_g1384_i0 PRJNA395690 1527 631 33.216495 209.59608345 Labilithrix luteola 1391654 Bacteria Bacteria 887 0   NTclustered gi|913610804|gb|CP012333.1| 1391654 g1384 i0 92.089 137.408874801902 632 46 99 4 1 630 7090688 7090059 Labilithrix luteola strain DSM 27648, complete genome blastn 86705 887 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
10007098 10007098 PRJNA395690_P_NODE_27008_length_170_cov_1.264463_g26856_i0 PRJNA395690 27008 170 1.264463 2.1495871 Stigmatella 40 Bacteria Bacteria 257 2.81e-64   NTclustered gi|507148216|ref|NR_103023.1| 41 g26856 i0 94.118 188.988235294118 170 9 100 1 1 170 740 572 Stigmatella aurantiaca strain DW4/3-1 23S ribosomal RNA gene, complete sequence blastn 32128 257 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
13165434 13165434 PRJNA395690_P_NODE_28051_length_167_cov_1.703390_g27899_i0 PRJNA395690 28051 167 1.70339 2.8446613 Pendulispora brunnea 2905690 Bacteria Bacteria 224 2.81e-54   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g27899 i0 91.411 99.8562874251497 163 14 99 0 4 166 7408347 7408185 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 16676 224 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
14440594 14440594 PRJNA395690_P_NODE_30532_length_165_cov_1.724138_g30380_i0 PRJNA395690 30532 165 1.724138 2.8448277 Pendulispora albinea 2741071 Bacteria Bacteria 233 4.5899999999999994e-57   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g30380 i0 92.593 293.042424242424 162 12 98 0 4 165 11179297 11179136 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 48352 233 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
14440723 14440723 PRJNA395690_P_NODE_6512_length_315_cov_2.864662_g6360_i0 PRJNA395690 6512 315 2.864662 9.0236853 Corallococcus exercitus 2316736 Bacteria Bacteria 167 1.01e-36   NTclustered gi|2809270164|gb|CP102577.1| 2316736 g6360 i0 80.617 41.7619047619048 227 35 71 9 45 267 88212 88433 Corallococcus exercitus strain SDU142 chromosome, complete genome blastn 13155 167 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus exercitus
19537657 19537657 PRJNA395690_P_NODE_35456_length_161_cov_1.419643_g35304_i0 PRJNA395690 35456 161 1.419643 2.28562523 Corallococcus exercitus 2316736 Bacteria Bacteria 292 7.24e-75   NTclustered gi|2809270164|gb|CP102577.1| 2316736 g35304 i0 99.379 92.1863354037267 161 1 100 0 1 161 87301 87461 Corallococcus exercitus strain SDU142 chromosome, complete genome blastn 14842 292 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus exercitus
24638184 24638184 PRJNA395690_P_NODE_480_length_1109_cov_5.869811_g403_i0 PRJNA395690 480 1109 5.869811 65.09620399 Labilithrix luteola 1391654 Bacteria Bacteria 1596 0   NTclustered gi|913610804|gb|CP012333.1| 1391654 g403 i0 92.646 159.011722272317 1115 73 100 5 1 1109 3941792 3942903 Labilithrix luteola strain DSM 27648, complete genome blastn 176344 1596 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
26822351 26822351 PRJNA395690_P_NODE_28701_length_167_cov_0.864407_g28549_i0 PRJNA395690 28701 167 0.864407 1.44355969 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 49.7 1.46e-5   NR TMB16698.1 2026735 g28549 i0 46.3 0.970059880239521 54 29 97 0 162 1 7 60 TMB16698.1 MAG: hypothetical protein E6J59_18480 [Deltaproteobacteria bacterium] diamond 162 49.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27976471 27976471 PRJNA395690_P_NODE_25705_length_173_cov_1.362903_g25553_i0 PRJNA395690 25705 173 1.362903 2.35782219 Polyangiaceae 49 Bacteria Bacteria 116 1.9000000000000003e-28   NR APR75102.1 888845 g25553 i0 94.7 1.97687861271676 57 3 98.8 0 1 171 35 91 APR75102.1 Serine/threonine protein kinase PrkC, regulator of stationary phase [Minicystis rosea] diamond 342 116 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
28528271 28528271 PRJNA395690_P_NODE_15767_length_205_cov_0.967949_g15615_i0 PRJNA395690 15767 205 0.967949 1.98429545 Myxococcales bacterium 2026763 Bacteria Bacteria 44.3 0.00425   NR MCA9561757.1 2026763 g15615 i0 40.3 0.980487804878049 67 38 95.1 1 198 4 62 128 MCA9561757.1 hypothetical protein [Myxococcales bacterium] diamond 201 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28686189 28686189 PRJNA395690_P_NODE_14007_length_217_cov_1.898810_g13855_i0 PRJNA395690 14007 217 1.89881 4.1204177 Myxococcota bacterium 2818507 Bacteria Bacteria 78.2 6.28e-16   NR MEM9456219.1 2818507 g13855 i0 50 0.884792626728111 64 31 88.5 1 197 6 71 133 MEM9456219.1 hypothetical protein [Myxococcota bacterium] diamond 192 78.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28906779 28906779 PRJNA395690_P_NODE_4088_length_390_cov_2.563050_g3939_i0 PRJNA395690 4088 390 2.56305 9.995895 Plesiocystis pacifica 191768 Bacteria Bacteria 48.9 0.00117   NR WP_006969482.1 191768 g3939 i0 41.3 0.484615384615385 63 37 48.5 0 7 195 303 365 WP_006969482.1 type IV pilus twitching motility protein PilT [Plesiocystis pacifica] diamond 189 48.9 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Plesiocystis Plesiocystis pacifica
29460182 29460182 PRJNA395690_P_NODE_34330_length_162_cov_1.327434_g34178_i0 PRJNA395690 34330 162 1.327434 2.15044308 Pseudomonadati 3379134 Bacteria Bacteria 62.4 1.48e-9   NR MCA9711197.1 2026763 g34178 i0 50.9 9.75925925925926 53 26 98.1 0 159 1 129 181 MCA9711197.1 serine/threonine-protein kinase PknK [Myxococcales bacterium] diamond 1581 62.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29649505 29649505 PRJNA395690_P_NODE_9230_length_268_cov_0.785388_g9078_i0 PRJNA395690 9230 268 0.785388 2.10483984 Pseudomonadati 3379134 Bacteria Bacteria 53.5 8.05e-6   NR MBN2496246.1 2026735 g9078 i0 39.8 3.64925373134328 83 47 89.6 2 13 252 97 179 MBN2496246.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 978 53.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29997487 29997487 PRJNA395690_P_NODE_37391_length_151_cov_2.470588_g37238_i0 PRJNA395690 37391 151 2.470588 3.73058788 Pseudomonadati 3379134 Bacteria Bacteria 73.2 8.92e-14   NR TMA55994.1 2026735 g37238 i0 68 8.94039735099338 50 16 99.3 0 1 150 72 121 TMA55994.1 MAG: SDR family oxidoreductase [Deltaproteobacteria bacterium] diamond 1350 73.6 0.994565217391304 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30770615 30770615 PRJNA395690_P_NODE_29894_length_166_cov_0.871795_g29742_i0 PRJNA395690 29894 166 0.871795 1.4471797 Polyangiaceae bacterium 2268199 Bacteria Bacteria 88.6 1.2e-20   NR HZF48946.1 2268199 g29742 i0 81.1 0.957831325301205 53 10 95.8 0 4 162 92 144 HZF48946.1 phage tail protein [Polyangiaceae bacterium] diamond 159 88.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31687135 31687135 PRJNA395690_P_NODE_11637_length_238_cov_2.137566_g11485_i0 PRJNA395690 11637 238 2.137566 5.08740708 Polyangiaceae bacterium 2268199 Bacteria Bacteria 43.1 0.0254   NR HEX2881709.1 2268199 g11485 i0 33.8 0.932773109243697 74 48 92 1 238 20 81 154 HEX2881709.1 CFI-box-CTERM domain-containing protein [Polyangiaceae bacterium] diamond 222 43.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31703976 31703976 PRJNA395690_P_NODE_24537_length_176_cov_1.204724_g24385_i0 PRJNA395690 24537 176 1.204724 2.12031424 Bacteria 2 Bacteria Bacteria 64.7 2.69e-10   NR HOD72399.1 2026735 g24385 i0 57.8 3.83522727272727 45 19 76.7 0 136 2 75 119 HOD72399.1 DUF3987 domain-containing protein [Deltaproteobacteria bacterium] diamond 675 64.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31813721 31813721 PRJNA395690_P_NODE_10037_length_257_cov_0.966346_g9885_i0 PRJNA395690 10037 257 0.966346 2.48350922 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 48.1 5.23e-5   NR MBI1948490.1 2026735 g9885 i0 44.2 0.607003891050584 52 25 56 1 256 113 27 78 MBI1948490.1 DUF1419 domain-containing protein [Deltaproteobacteria bacterium] diamond 156 48.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31971899 31971899 PRJNA395690_P_NODE_8558_length_276_cov_2.066079_g8406_i0 PRJNA395690 8558 276 2.066079 5.70237804 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 49.3 1.13e-4   NR MDP3940643.1 2026735 g8406 i0 66.7 0.358695652173913 33 10 35.9 1 4 102 24 55 MDP3940643.1 HNH endonuclease [Deltaproteobacteria bacterium] diamond 99 49.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;