metadata: contig_metadata: 16 rows where bioproject = "PRJNA395690", tax_kingdom = "Pseudomonadati" and tax

16 rows where bioproject = "PRJNA395690", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

descending

Link	rowid ▼	query	bioproject	node	length	coverage	rel_abundance	taxname_lca	taxid_lca	taxoncategory	taxoncategorysimple	bits	evalue	analysis_used	target	taxid	gene	allele	pident	sumperc_cov	alnlen	mismatch	qcov	gapopen	qstart	qend	tstart	tend	target_title	analysis	sumalnlen	maxbits	bits_percmax	tax_superkingdom	tax_kingdom	tax_phylum	tax_class	tax_order	tax_family	tax_genus	tax_species
4907007	4907007	PRJNA395690_P_NODE_26284_length_171_cov_2.475410_g26132_i0	PRJNA395690	26284	171	2.47541	4.2329511	FCB group	1783270	Bacteria	Bacteria	316	4.6e-82	NTclustered	gi\|1483583505\|emb\|LT631429.1\|	204	g26132	i0	100	108	171	0	100	0	1	171	33413	33243	Campylobacter showae genome assembly, plasmid: V	blastn	18468	316	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter showae
4907036	4907036	PRJNA395690_P_NODE_30544_length_165_cov_1.706897_g30392_i0	PRJNA395690	30544	165	1.706897	2.81638005	root	1	Root_unresolved	Root_unresolved	305	9.59e-79	NTclustered	gi\|1200166513\|gb\|KX931109.1\|	195	g30392	i0	100	24.230303030303	165	0	100	0	1	165	248	84	Campylobacter coli lincosamide O-nucleotidyltransferase (lnuG) gene, complete cds	blastn	3998	305	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter coli
10007204	10007204	PRJNA395690_P_NODE_8548_length_276_cov_3.885463_g8396_i0	PRJNA395690	8548	276	3.885463	10.72387788	Campylobacter	194	Bacteria	Bacteria	510	3.48e-140	NTclustered	gi\|1483583505\|emb\|LT631429.1\|	204	g8396	i0	100	239.971014492754	276	0	100	0	1	276	30514	30789	Campylobacter showae genome assembly, plasmid: V	blastn	66232	510	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter showae
12557750	12557750	PRJNA395690_P_NODE_32950_length_163_cov_1.754386_g32798_i0	PRJNA395690	32950	163	1.754386	2.85964918	Campylobacter	194	Bacteria	Bacteria	268	1.24e-67	NTclustered	gi\|1483583508\|emb\|LT631432.1\|	204	g32798	i0	96.894	2.48466257668712	161	3	98	1	1	159	1388	1548	Campylobacter showae genome assembly, plasmid: VIII	blastn	405	268	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter showae
13165228	13165228	PRJNA395690_P_NODE_1231_length_705_cov_3.045732_g1102_i0	PRJNA395690	1231	705	3.045732	21.4724106	Arcobacter sp. AM70-1	235130	Bacteria	Bacteria	1230	0	NTclustered	gi\|32140587\|dbj\|AB112489.1\|	235130	g1102	i0	98.156	380.392907801418	705	13	100	0	1	705	758	54	Arcobacter sp. AM70-1 gene for 23S rRNA, partial sequence	blastn	268177	1230	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Arcobacteraceae	Arcobacter	Arcobacter sp. AM70-1
16989110	16989110	PRJNA395690_P_NODE_26034_length_172_cov_1.634146_g25882_i0	PRJNA395690	26034	172	1.634146	2.81073112	Campylobacter ureolyticus	827	Bacteria	Bacteria	318	1.2899999999999999e-82	NTclustered	gi\|1829985141\|gb\|CP050963.1\|	827	g25882	i0	100	221.93023255814	172	0	100	0	1	172	203380	203209	Campylobacter ureolyticus strain FDAARGOS_673 chromosome	blastn	38172	318	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter ureolyticus
18263444	18263444	PRJNA395690_P_NODE_37295_length_152_cov_2.436893_g37142_i0	PRJNA395690	37295	152	2.436893	3.70407736	Malaciobacter molluscorum	1032072	Bacteria	Bacteria	76.8	7.37e-10	NTclustered	gi\|1474788135\|gb\|CP032098.1\|	870501	g37142	i0	95.745	0.855263157894737	47	2	31	0	104	150	790999	791045	Malaciobacter molluscorum LMG 25693 strain CECT 7696 chromosome, complete genome	blastn	130	76.8	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Arcobacteraceae	Malaciobacter	Malaciobacter molluscorum
18930380	18930380	PRJNA395690_P_NODE_10915_length_246_cov_2.228426_g10763_i0	PRJNA395690	10915	246	2.228426	5.48192796	Aliarcobacter	2321111	Bacteria	Bacteria	449	6.74e-122	NTclustered	gi\|1231709647\|emb\|LT906455.1\|	28197	g10763	i0	99.593	373.109756097561	246	1	100	0	1	246	851630	851875	Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1	blastn	91785	449	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Arcobacteraceae	Aliarcobacter	Aliarcobacter butzleri
20205231	20205231	PRJNA395690_P_NODE_32976_length_163_cov_1.675439_g32824_i0	PRJNA395690	32976	163	1.675439	2.73096557	Campylobacter	194	Bacteria	Bacteria	257	2.68e-64	NTclustered	gi\|1829985141\|gb\|CP050963.1\|	827	g32824	i0	97.973	6.38036809815951	148	3	91	0	1	148	1531447	1531300	Campylobacter ureolyticus strain FDAARGOS_673 chromosome	blastn	1040	257	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter ureolyticus
22756040	22756040	PRJNA395690_P_NODE_36378_length_160_cov_3.567568_g36226_i0	PRJNA395690	36378	160	3.567568	5.7081088	Campylobacter	194	Bacteria	Bacteria	291	2.5799999999999998e-74	NTclustered	gi\|2093923041\|gb\|CP082872.1\|	76517	g36226	i0	99.375	2	160	1	100	0	1	160	2180	2021	Campylobacter hominis strain FDAARGOS_1467 plasmid unnamed1, complete sequence	blastn	320	291	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter hominis
26663536	26663536	PRJNA395690_P_NODE_28301_length_167_cov_0.864407_g28149_i0	PRJNA395690	28301	167	0.864407	1.44355969	Helicobacter pylori	210	Bacteria	Bacteria	111	2.51e-28	NR	GAA8850103.1	210	g28149	i0	100	0.988023952095808	55	0	98.8	0	2	166	73	127	GAA8850103.1 hypothetical protein DUHN55_32560 [Helicobacter pylori]	diamond	165	111	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Helicobacteraceae	Helicobacter	Helicobacter pylori
27471456	27471456	PRJNA395690_P_NODE_6823_length_309_cov_0.980769_g6671_i0	PRJNA395690	6823	309	0.980769	3.03057621	Pseudomonadati	3379134	Bacteria	Bacteria	85.9	3.46e-18	NR	KIM10424.1	1539065	g6671	i0	55.1	1.33980582524272	69	31	67	0	207	1	1	69	KIM10424.1 MAG: hypothetical protein KU38_07590 [Sulfurovum sp. FS08-3]	diamond	414	85.9	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Sulfurovaceae	Sulfurovum	Sulfurovum sp. FS08-3
28559794	28559794	PRJNA395690_P_NODE_18267_length_190_cov_2.546099_g18115_i0	PRJNA395690	18267	190	2.546099	4.8375881	Helicobacter pylori	210	Bacteria	Bacteria	68.9	4.22e-13	NR	GAA9125453.1	210	g18115	i0	91.5	0.931578947368421	59	5	93.2	0	177	1	2	60	GAA9125453.1 hypothetical protein Kyoto190A_0860 [Helicobacter pylori]	diamond	177	68.9	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Helicobacteraceae	Helicobacter	Helicobacter pylori
29159784	29159784	PRJNA395690_P_NODE_35789_length_161_cov_0.910714_g35637_i0	PRJNA395690	35789	161	0.910714	1.46624954	Arcobacter sp. CECT 8989	2044509	Bacteria	Bacteria	91.3	1.63e-21	NR	WP_129088716.1	2044509	g35637	i0	77.4	1.97515527950311	53	12	98.8	0	2	160	24	76	WP_129088716.1 acyltransferase [Arcobacter sp. CECT 8989]	diamond	318	91.3	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Arcobacteraceae	Arcobacter	Arcobacter sp. CECT 8989
32415038	32415038	PRJNA395690_P_NODE_19159_length_188_cov_2.661871_g19007_i0	PRJNA395690	19159	188	2.661871	5.00431748	Helicobacter pylori	210	Bacteria	Bacteria	56.2	6.6e-9	NR	GAA8795519.1	210	g19007	i0	63.4	0.654255319148936	41	14	65.4	1	124	2	4	43	GAA8795519.1 hypothetical protein Kyoto149A_0380 [Helicobacter pylori]	diamond	123	56.2	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Helicobacteraceae	Helicobacter	Helicobacter pylori
32793238	32793238	PRJNA395690_P_NODE_27240_length_169_cov_1.675000_g27088_i0	PRJNA395690	27240	169	1.675	2.83075	Helicobacter pylori	210	Bacteria	Bacteria	65.9	2.84e-11	NR	GAA8796459.1	210	g27088	i0	76.2	4.47337278106509	42	10	74.6	0	147	22	129	170	GAA8796459.1 hypothetical protein Kyoto149A_1020 [Helicobacter pylori]	diamond	756	65.9	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Helicobacteraceae	Helicobacter	Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;