RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA395690", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 4 ✖

tax_kingdom 1

  • Fungi · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA395690 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19537678 19537678 PRJNA395690_P_NODE_37316_length_151_cov_29.960784_g37163_i0 PRJNA395690 37316 151 29.960784 45.24078384 Physoderma maydis 276838 Fungi Fungi 110 7.21e-20   NTclustered gi|626438334|ref|NR_119547.1| 276838 g37163 i0 87.5 61.1456953642384 96 11 64 1 55 150 296 202 Physoderma maydis DUKE DUH0007932 ITS region; from reference material blastn 9233 110 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Physoderma Physoderma maydis
27265069 27265069 PRJNA395690_P_NODE_24463_length_176_cov_1.299213_g24311_i0 PRJNA395690 24463 176 1.299213 2.28661488 Blastocladiella britannica 64508 Fungi Fungi 86.3 6.87e-18   NR KAI9219724.1 64508 g24311 i0 75.9 1.84090909090909 54 13 92 0 13 174 167 220 KAI9219724.1 hypothetical protein BC828DRAFT_406444 [Blastocladiella britannica] diamond 324 86.3 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
27597807 27597807 PRJNA395690_P_NODE_28624_length_167_cov_0.864407_g28472_i0 PRJNA395690 28624 167 0.864407 1.44355969 Fungi 4751 Fungi Fungi 49.7 4.44e-5   NR KAI9136497.1 1500003 g28472 i0 83.3 1.29341317365269 24 4 43.1 0 165 94 263 286 KAI9136497.1 anticodon-binding protein [Paraphysoderma sedebokerense] diamond 216 49.7 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
28496642 28496642 PRJNA395690_P_NODE_2467_length_497_cov_1.363839_g2319_i0 PRJNA395690 2467 497 1.363839 6.77827983 Blastocladiella emersonii ATCC 22665 1313167 Fungi Fungi 102 6.51e-22   NR KAI9184269.1 1313167 g2319 i0 38.8 0.995975855130785 165 89 93.6 7 496 32 72 234 KAI9184269.1 hypothetical protein H9P43_003322 [Blastocladiella emersonii ATCC 22665] diamond 495 102 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;