RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA395690", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA395690 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6182146 6182146 PRJNA395690_P_NODE_3605_length_414_cov_6.106849_g3456_i0 PRJNA395690 3605 414 6.106849 25.28235486 Mycoplasmoidales 2790996 Bacteria Bacteria 634 3.1099999999999998e-177   NTclustered gi|1563789200|emb|LR214962.1| 2115 g3456 i0 94.431 139.200483091787 413 22 99 1 1 412 356011 355599 Mycoplasma fermentans strain NCTC10117 genome assembly, chromosome: 8 blastn 57629 634 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis fermentans
18930590 18930590 PRJNA395690_P_NODE_6415_length_317_cov_4.455224_g6264_i0 PRJNA395690 6415 317 4.455224 14.12306008 Mycoplasma 2093 Bacteria Bacteria 84.2 1.05e-11   NTclustered gi|2040452726|gb|CP074573.1| 2231116 g6264 i0 80.909 6.02839116719243 110 17 34 4 63 169 1703833 1703941 Tenericutes bacterium strain zrk4 chromosome, complete genome blastn 1911 84.2 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium
31465993 31465993 PRJNA395690_P_NODE_10836_length_247_cov_1.853535_g10684_i0 PRJNA395690 10836 247 1.853535 4.57823145 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 44.3 0.011   NR HHZ17899.1 1898209 g10684 i0 38.2 0.825910931174089 68 39 82.6 1 25 228 178 242 HHZ17899.1 hypothetical protein [Acholeplasmataceae bacterium] diamond 204 44.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;