RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA395690", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA395690 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2354507 2354507 PRJNA395690_P_NODE_36462_length_160_cov_2.054054_g36310_i0 PRJNA395690 36462 160 2.054054 3.2864864 Haliangium 162027 Bacteria Bacteria 291 2.5799999999999998e-74   NTclustered gi|27227483|gb|AY157088.1| 34034 g36310 i0 99.375 100 160 1 100 0 1 160 431 272 Uncultured delta proteobacterium isolate WB-32 16S ribosomal RNA gene, partial sequence blastn 16000 291 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
13165552 13165552 PRJNA395690_P_NODE_37111_length_153_cov_3.826923_g36958_i0 PRJNA395690 37111 153 3.826923 5.85519219 uncultured delta proteobacterium 34034 Bacteria Bacteria 187 3.2899999999999992e-43   NTclustered gi|2874253999|emb|OY970324.1| 34034 g36958 i0 90.21 297.986928104575 143 14 93 0 9 151 82574 82432 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 45592 187 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
19537461 19537461 PRJNA395690_P_NODE_21376_length_183_cov_1.656716_g21224_i0 PRJNA395690 21376 183 1.656716 3.03179028 uncultured delta proteobacterium 34034 Bacteria Bacteria 246 6.659999999999999e-61   NTclustered gi|2874253999|emb|OY970324.1| 34034 g21224 i0 91.257 111.327868852459 183 12 99 4 3 183 82236 82056 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 20373 246 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
20205140 20205140 PRJNA395690_P_NODE_16876_length_198_cov_1.000000_g16724_i0 PRJNA395690 16876 198 1 1.98 Bdellovibrionota 3018035 Bacteria Bacteria 254 4.38e-63   NTclustered gi|345647145|gb|JF516018.1| 34034 g16724 i0 89.899 98.989898989899 198 19 100 1 1 198 539 343 Uncultured delta proteobacterium clone W-LLS260 16S ribosomal RNA gene, partial sequence blastn 19600 254 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;