RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA395690" and tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 3 ✖

bioproject 1

  • PRJNA395690 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9339943 9339943 PRJNA395690_P_NODE_37208_length_152_cov_4.000000_g37055_i0 PRJNA395690 37208 152 4 6.08 Symbiopectobacterium purcellii 2871826 Bacteria Bacteria 270 3.15e-68   NTclustered gi|2087438146|gb|CP081864.1| 2871826 g37055 i0 98.684 607.190789473684 152 2 100 0 1 152 208185 208336 Symbiopectobacterium purcellii strain SyEd1 chromosome, complete genome blastn 92293 270 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Symbiopectobacterium Symbiopectobacterium purcellii
19537694 19537694 PRJNA395690_P_NODE_4776_length_363_cov_65.789809_g4627_i0 PRJNA395690 4776 363 65.789809 238.81700667 Symbiopectobacterium purcellii 2871826 Bacteria Bacteria 643 4.469999999999999e-180   NTclustered gi|2087438146|gb|CP081864.1| 2871826 g4627 i0 98.626 715.617079889807 364 3 100 2 1 363 209488 209850 Symbiopectobacterium purcellii strain SyEd1 chromosome, complete genome blastn 259769 643 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Symbiopectobacterium Symbiopectobacterium purcellii
31324383 31324383 PRJNA395690_P_NODE_21915_length_182_cov_1.511278_g21763_i0 PRJNA395690 21915 182 1.511278 2.75052596 Symbiopectobacterium 801 Bacteria Bacteria 106 4.26e-27   NR WP_252321098.1 801 g21763 i0 98.3 2.96703296703297 60 1 98.9 0 3 182 17 76 WP_252321098.1 MULTISPECIES: type II secretion system F family protein [Symbiopectobacterium] diamond 540 106 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Symbiopectobacterium  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;