RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA395690", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA395690 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13832366 13832366 PRJNA395690_P_NODE_1051_length_763_cov_1.298319_g929_i0 PRJNA395690 1051 763 1.298319 9.90617397 Chlorobiales 191411 Bacteria Bacteria 110 4.48e-19   NTclustered gi|470481248|ref|NR_076462.1| 1096 g929 i0 86.111 13.1192660550459 108 8 13 7 321 423 436 541 Chlorobium phaeobacteroides strain DSM 266 23S ribosomal RNA gene, complete sequence blastn 10010 110 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides
30201484 30201484 PRJNA395690_P_NODE_17092_length_196_cov_1.734694_g16940_i0 PRJNA395690 17092 196 1.734694 3.40000024 Chlorobiota bacterium 2268192 Bacteria Bacteria 102 1.0099999999999999e-23   NR NPA07685.1 2268192 g16940 i0 85.9 0.979591836734694 64 9 98 0 3 194 107 170 NPA07685.1 hypothetical protein [Chlorobiota bacterium] diamond 192 102 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;