RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA395690", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA395690 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
411668 411668 PRJNA395690_P_NODE_30281_length_166_cov_0.863248_g30129_i0 PRJNA395690 30281 166 0.863248 1.43299168 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 296 5.82e-76   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g30129 i0 98.795 3.46987951807229 166 2 100 0 1 166 4045 4210 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 576 296 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
4238865 4238865 PRJNA395690_P_NODE_3924_length_398_cov_2.042980_g3775_i0 PRJNA395690 3924 398 2.04298 8.1310604 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 617 3e-172   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g3775 i0 94.724 8.24874371859296 398 20 100 1 1 398 2017 2413 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3283 617 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
11890554 11890554 PRJNA395690_P_NODE_31610_length_164_cov_2.286957_g31458_i0 PRJNA395690 31610 164 2.286957 3.75060948 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 298 1.59e-76   NTclustered gi|2031940093|emb|OD957679.1| 5763 g31458 i0 99.39 1 164 1 100 0 1 164 513 350 Naegleria fowleri Karachi_NF001 strain blastn 164 298 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;