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contig_metadata

19 rows where bioproject = "PRJNA393181" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 19 ✖

bioproject 1

  • PRJNA393181 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1078355 1078355 PRJNA393181_S_NODE_18501_length_276_cov_1.874477_g18395_i0 PRJNA393181 18501 276 1.874477 5.17355652 Candidatus Methanogranum 1577789 Archaea Archaea 75 5.42e-9   NTclustered gi|2621784480|emb|OY780938.1| 2093355 g18395 i0 83.544 1.28985507246377 79 13 29 0 85 163 1147729 1147651 MAG: uncultured Candidatus Methanogranum sp. isolate 9d90576e-3f35-4afd-8682-ecdb60e67c32 genome assembly, chromosome: 1 blastn 356 75 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae Candidatus Methanogranum uncultured Candidatus Methanogranum sp.
4237439 4237439 PRJNA393181_S_NODE_24444_length_233_cov_2.321429_g24338_i0 PRJNA393181 24444 233 2.321429 5.40892957 Methanomassiliicoccales archaeon LGM-DZ1 3018978 Archaea Archaea 65.8 2.68e-6   NTclustered gi|2514100973|gb|CP115556.1| 3018978 g24338 i0 91.489 0.351931330472103 47 4 20 0 109 155 1515869 1515915 Methanomassiliicoccales archaeon LGM-DZ1 chromosome, complete genome blastn 82 65.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales     Methanomassiliicoccales archaeon LGM-DZ1
6788452 6788452 PRJNA393181_S_NODE_38306_length_174_cov_1.963504_g38200_i0 PRJNA393181 38306 174 1.963504 3.41649696 Natrarchaeobaculum sulfurireducens 2044521 Archaea Archaea 67.6 5.23e-7   NTclustered gi|1464911882|gb|CP024046.1| 2044521 g38200 i0 80.645 3.26436781609195 93 12 52 6 85 174 30781 30870 Natrarchaeobaculum sulfurireducens strain AArc1 plasmid pAArc1-02, complete sequence blastn 568 67.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrarchaeobaculum Natrarchaeobaculum sulfurireducens
8063611 8063611 PRJNA393181_S_NODE_23127_length_241_cov_2.431373_g23021_i0 PRJNA393181 23127 241 2.431373 5.85960893 Halobacterium noricense 223182 Archaea Archaea 52.8 0.022   NTclustered gi|2168248316|gb|CP089469.1| 223182 g23021 i0 100 0.116182572614108 28 0 12 0 135 162 112720 112747 Halobacterium noricense strain JCM 15102 plasmid unnamed1, complete sequence blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium noricense
11889433 11889433 PRJNA393181_S_NODE_34690_length_186_cov_1.832215_g34584_i0 PRJNA393181 34690 186 1.832215 3.4079199 Halococcoides cellulosivorans 1679096 Archaea Archaea 111 2.59e-20   NTclustered gi|1379148656|gb|CP028858.1| 1679096 g34584 i0 90.476 4.47849462365591 84 8 45 0 103 186 917968 918051 Halococcoides cellulosivorans strain HArcel1 chromosome, complete genome blastn 833 111 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halococcoides Halococcoides cellulosivorans
13164004 13164004 PRJNA393181_S_NODE_1911_length_708_cov_3.052161_g1838_i0 PRJNA393181 1911 708 3.052161 21.60929988 Nanobdellati 1783276 Archaea Archaea 239 5.24e-72   NR MBL7051962.1 2026764 g1838 i0 52.6 5.03813559322034 234 106 99.2 1 7 708 68 296 MBL7051962.1 M48 family metalloprotease [Nanoarchaeota archaeon] diamond 3567 239 1 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon
15713201 15713201 PRJNA393181_S_NODE_30113_length_204_cov_2.449102_g30007_i0 PRJNA393181 30113 204 2.449102 4.99616808 Halalkaliarchaeum desulfuricum 2055893 Archaea Archaea 56.5 0.001   NTclustered gi|1338053427|gb|CP025066.1| 2055893 g30007 i0 96.97 0.161764705882353 33 1 16 0 15 47 1024604 1024636 Halalkaliarchaeum desulfuricum strain AArc-Sl chromosome, complete genome blastn 33 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halalkaliarchaeum Halalkaliarchaeum desulfuricum
16380989 16380989 PRJNA393181_S_NODE_36633_length_179_cov_3.359155_g36527_i0 PRJNA393181 36633 179 3.359155 6.01288745 Natrinema 88723 Archaea Archaea 82.4 1.93e-11   NTclustered gi|2270264148|gb|CP100445.1| 2961570 g36527 i0 84.884 18.4916201117318 86 7 46 6 1 83 3144535 3144453 Natrinema caseinilyticum strain ZJ2 chromosome, complete genome blastn 3310 82.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema caseinilyticum
18262126 18262126 PRJNA393181_S_NODE_29955_length_205_cov_2.000000_g29849_i0 PRJNA393181 29955 205 2 4.1 Haloprofundus halobius 2876194 Archaea Archaea 52.8 0.018   NTclustered gi|2099489103|gb|CP083666.1| 2876194 g29849 i0 100 0.136585365853659 28 0 14 0 40 67 1938739 1938766 Haloprofundus halobius strain SEDH52 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloprofundus Haloprofundus halobius
18262305 18262305 PRJNA393181_S_NODE_37035_length_178_cov_2.014184_g36929_i0 PRJNA393181 37035 178 2.014184 3.58524752 Halococcus qingdaonensis 224402 Archaea Archaea 58.4 3.24e-4   NTclustered gi|2281256326|gb|CP101943.1| 224402 g36929 i0 92.683 0.230337078651685 41 2 22 1 24 63 729422 729382 Halococcus qingdaonensis strain CGMCC 1.4243 chromosome, complete genome blastn 41 58.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus qingdaonensis
23362484 23362484 PRJNA393181_S_NODE_24559_length_232_cov_2.964103_g24453_i0 PRJNA393181 24559 232 2.964103 6.87671896 Halovivax gelatinilyticus 2961597 Archaea Archaea 54.7 0.006   NTclustered gi|2273668750|gb|CP101322.1| 2961597 g24453 i0 100 0.125 29 0 13 0 189 217 2137114 2137086 Halovivax gelatinilyticus strain CGA30 chromosome, complete genome blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halovivax Halovivax gelatinilyticus
23362510 23362510 PRJNA393181_S_NODE_25859_length_225_cov_1.670213_g25753_i0 PRJNA393181 25859 225 1.670213 3.75797925 Halocatena marina 2934937 Archaea Archaea 56.5 0.002   NTclustered gi|2325776350|gb|CP110251.1| 2934937 g25753 i0 100 0.4 30 0 13 0 121 150 109098 109127 Halocatena marina strain RDMS1 plasmid unnamed2, complete sequence blastn 90 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Halocatena Halocatena marina
26600180 26600180 PRJNA393181_S_NODE_30381_length_203_cov_1.909639_g30275_i0 PRJNA393181 30381 203 1.909639 3.87656717 Candidatus Bathyarchaeia archaeon 3045160 Archaea Archaea 112 1.1000000000000002e-28   NR HYB69673.1 3045160 g30275 i0 68.7 1.98029556650246 67 21 99 0 203 3 118 184 HYB69673.1 methyltransferase domain-containing protein [Candidatus Bathyarchaeia archaeon] diamond 402 112 1 Archaea   Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeia       Candidatus Bathyarchaeia archaeon
27644188 27644188 PRJNA393181_S_NODE_13544_length_327_cov_5.024138_g13438_i0 PRJNA393181 13544 327 5.024138 16.42893126 Natronomonas aquatica 2841590 Archaea Archaea 44.3 0.0153   NR WP_256030377.1 2841590 g13438 i0 36.7 0.55045871559633 60 36 55 1 73 252 46 103 WP_256030377.1 30S ribosomal protein S13 [Natronomonas aquatica] diamond 180 44.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas aquatica
28433399 28433399 PRJNA393181_S_NODE_7946_length_423_cov_2.955959_g7840_i0 PRJNA393181 7946 423 2.955959 12.50370657 Methanothrix sp. 90426 Archaea Archaea 53.5 2.39e-5   NR MCX6670088.1 90426 g7840 i0 64.3 0.297872340425532 42 13 28.4 1 192 311 1 42 MCX6670088.1 tetratricopeptide repeat protein [Methanothrix sp.] diamond 126 53.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
29159717 29159717 PRJNA393181_S_NODE_18229_length_278_cov_2.531120_g18123_i0 PRJNA393181 18229 278 2.53112 7.0365136 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 62.4 6.86e-9   NR MAH45939.1 2026773 g18123 i0 52.8 0.571942446043165 53 25 57.2 0 118 276 9 61 MAH45939.1 hypothetical protein [Candidatus Pacearchaeota archaeon] diamond 159 62.4 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
29822337 29822337 PRJNA393181_S_NODE_12751_length_337_cov_6.056667_g12645_i0 PRJNA393181 12751 337 6.056667 20.41096779 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 52.8 3.19e-5   NR MCK5606176.1 2026773 g12645 i0 41.7 0.534124629080119 60 34 53.4 1 19 198 48 106 MCK5606176.1 hypothetical protein [Candidatus Pacearchaeota archaeon] diamond 180 52.8 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
30770566 30770566 PRJNA393181_S_NODE_34254_length_187_cov_3.600000_g34148_i0 PRJNA393181 34254 187 3.6 6.732 Halorhabdus utahensis 146826 Archaea Archaea 42.4 0.0243   NR WP_049941156.1 146826 g34148 i0 52.5 0.641711229946524 40 19 64.2 0 67 186 20 59 WP_049941156.1 glycosyltransferase [Halorhabdus utahensis] diamond 120 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorhabdus Halorhabdus utahensis
32257021 32257021 PRJNA393181_S_NODE_13858_length_324_cov_2.097561_g13752_i0 PRJNA393181 13858 324 2.097561 6.79609764 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 84.7 1.72e-16   NR MAH45939.1 2026773 g13752 i0 46.3 1 108 57 99.1 1 322 2 51 158 MAH45939.1 hypothetical protein [Candidatus Pacearchaeota archaeon] diamond 324 84.7 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;