RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA393181" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA393181 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27028849 27028849 PRJNA393181_S_NODE_21702_length_251_cov_2.378505_g21596_i0 PRJNA393181 21702 251 2.378505 5.97004755 Paramecium 5884 SAR_Eukaryotes SAR_Eukaryotes 58.9 8.07e-8   NR XP_001458813.1 5888 g21596 i0 36.3 1.91235059760956 80 51 95.6 0 240 1 14 93 XP_001458813.1 uncharacterized protein GSPATT00024144001 [Paramecium tetraurelia] diamond 480 58.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
27991433 27991433 PRJNA393181_S_NODE_44185_length_158_cov_1.933884_g44079_i0 PRJNA393181 44185 158 1.933884 3.05553672 Paramecium octaurelia 43137 SAR_Eukaryotes SAR_Eukaryotes 44.7 0.00246   NR CAD8195753.1 43137 g44079 i0 40.8 0.930379746835443 49 29 93 0 158 12 363 411 CAD8195753.1 unnamed protein product [Paramecium octaurelia] diamond 147 44.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium octaurelia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;