RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA393181", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

  • Viridiplantae · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA393181 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29285685 29285685 PRJNA393181_S_NODE_29689_length_206_cov_2.621302_g29583_i0 PRJNA393181 29689 206 2.621302 5.39988212 Raphidocelis subcapitata 307507 Plants Plants 53.1 4.61e-6   NR GBF93843.1 307507 g29583 i0 82.1 1.51456310679612 28 5 40.8 0 85 2 70 97 GBF93843.1 hydroxyacylglutathione hydrolase [Raphidocelis subcapitata] diamond 312 53.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata
31023186 31023186 PRJNA393181_S_NODE_23475_length_239_cov_1.980198_g23369_i0 PRJNA393181 23475 239 1.980198 4.73267322 Coccomyxa subellipsoidea C-169 574566 Plants Plants 90.9 6.09e-20   NR XP_005648139.1 574566 g23369 i0 58 2.04602510460251 81 32 99.2 1 1 237 134 214 XP_005648139.1 hypothetical protein COCSUDRAFT_66004 [Coccomyxa subellipsoidea C-169] diamond 489 90.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;