RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA393181" and tax_kingdom = "Orthornavirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 8 ✖

bioproject 1

  • PRJNA393181 · 8 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1685062 1685062 PRJNA393181_S_NODE_17842_length_281_cov_952.696721_g17736_i0 PRJNA393181 17842 281 952.696721 2677.07778601 Betacoronavirus pandemicum 3418604 Viruses Viruses 137 6.949999999999999e-28   NTclustered gi|2165836885|emb|OV197189.1| 2697049 g17736 i0 96.429 30.8078291814947 84 1 30 2 190 272 114 32 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 8657 137 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
4237423 4237423 PRJNA393181_S_NODE_23884_length_236_cov_929.090452_g23778_i0 PRJNA393181 23884 236 929.090452 2192.65346672 Betacoronavirus pandemicum 3418604 Viruses Viruses 82.4 2.7e-11   NTclustered gi|2565352131|emb|OY625234.1| 2697049 g23778 i0 92.982 7.33050847457627 57 2 24 2 168 223 23683 23738 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 1730 82.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
8063316 8063316 PRJNA393181_S_NODE_11387_length_357_cov_523.100000_g11281_i0 PRJNA393181 11387 357 523.1 1867.467 Orthoavulavirus javaense 3051375 Viruses Viruses 115 4.25e-21   NTclustered gi|1810954291|gb|MN727300.2| 2560319 g11281 i0 91.765 0.543417366946779 85 3 23 4 267 348 15253 15336 Avian paramyxovirus 1 isolate chicken/Indonesia/ITA/012WJ, complete genome blastn 194 115 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthoavulavirus Orthoavulavirus javaense
11889340 11889340 PRJNA393181_S_NODE_30710_length_201_cov_133.329268_g30604_i0 PRJNA393181 30710 201 133.329268 267.99182868 Betacoronavirus pandemicum 3418604 Viruses Viruses 73.1 1.34e-8   NTclustered gi|2165835426|emb|OV196492.1| 2697049 g30604 i0 97.674 21.134328358209 43 0 21 1 1 43 213 254 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 4248 73.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
14439375 14439375 PRJNA393181_S_NODE_29832_length_205_cov_129.023810_g29726_i0 PRJNA393181 29832 205 129.02381 264.4988105 Betacoronavirus pandemicum 3418604 Viruses Viruses 75 3.82e-9   NTclustered gi|2165835426|emb|OV196492.1| 2697049 g29726 i0 97.727 21.009756097561 44 0 21 1 162 205 255 213 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 4307 75 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
15713488 15713488 PRJNA393181_S_NODE_41793_length_164_cov_1.826772_g41687_i0 PRJNA393181 41793 164 1.826772 2.99590608 Skokie dicistro-like virus 2789443 Viruses Viruses 278 2.08e-70   NTclustered gi|2806502719|gb|PQ054859.1| 2789443 g41687 i0 97.531 0.98780487804878 162 4 99 0 1 162 5190 5029 MAG: Skokie dicistro-like virus isolate QJ5MS4721 genomic sequence blastn 162 278 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Skokie dicistro-like virus
23362705 23362705 PRJNA393181_S_NODE_33439_length_190_cov_143.424837_g33333_i0 PRJNA393181 33439 190 143.424837 272.5071903 Betacoronavirus pandemicum 3418604 Viruses Viruses 71.3 4.51e-8   NTclustered gi|2557650385|emb|OY679204.1| 2697049 g33333 i0 100 22.9736842105263 38 0 20 0 147 184 21732 21769 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4365 71.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
24636980 24636980 PRJNA393181_S_NODE_33440_length_190_cov_110.777778_g33334_i0 PRJNA393181 33440 190 110.777778 210.4777782 Betacoronavirus pandemicum 3418604 Viruses Viruses 75 3.48e-9   NTclustered gi|2565352131|emb|OY625234.1| 2697049 g33334 i0 100 23.0473684210526 40 0 21 0 149 188 23686 23725 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4379 75 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;