RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA393181" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 8 ✖

bioproject 1

  • PRJNA393181 · 8 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5514765 5514765 PRJNA393181_S_NODE_805_length_907_cov_3.349425_g750_i0 PRJNA393181 805 907 3.349425 30.37928475 delta/epsilon subdivisions 68525 Bacteria Bacteria 261 1.03e-83   NR SBW10919.1 34034 g750 i0 67 9.35722160970232 203 64 66.2 1 602 3 2 204 SBW10919.1 putative nucleotidyl transferase [uncultured delta proteobacterium] diamond 8487 261 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
8063332 8063332 PRJNA393181_S_NODE_12027_length_348_cov_2.646302_g11921_i0 PRJNA393181 12027 348 2.646302 9.20913096 Pseudomonadota 1224 Bacteria Bacteria 131 1.7e-34   NR OGQ75385.1 1797892 g11921 i0 70 1.37931034482759 80 24 69 0 241 2 257 336 OGQ75385.1 MAG: amino acid ABC transporter substrate-binding protein [Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_57_22] diamond 480 132 0.992424242424242 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_57_22
13164763 13164763 PRJNA393181_S_NODE_6671_length_457_cov_4.088095_g6565_i0 PRJNA393181 6671 457 4.088095 18.68259415 Pseudomonadota 1224 Bacteria Bacteria 208 6.320000000000001e-64   NR OGP63755.1 1797827 g6565 i0 75.6 2.42231947483589 123 30 80.7 0 3 371 197 319 OGP63755.1 MAG: amino acid ABC transporter substrate-binding protein [Deltaproteobacteria bacterium RBG_13_49_15] diamond 1107 210 0.990476190476191 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_49_15
23363150 23363150 PRJNA393181_S_NODE_8699_length_407_cov_2.324324_g8593_i0 PRJNA393181 8699 407 2.324324 9.45999868 Myxococcota 2818505 Bacteria Bacteria 116 2.39e-30   NR MCH9046007.1 2024889 g8593 i0 71.6 2.83046683046683 74 21 54.5 0 226 5 8 81 MCH9046007.1 GFA family protein [SAR324 cluster bacterium] diamond 1152 116 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
27345170 27345170 PRJNA393181_S_NODE_12223_length_345_cov_3.275974_g12117_i0 PRJNA393181 12223 345 3.275974 11.3021103 Bacteria 2 Bacteria Bacteria 113 1.29e-26   NR CAB1072383.1 334747 g12117 i0 49.1 4.78260869565217 110 56 95.7 0 344 15 116 225 CAB1072383.1 hypothetical protein D1AOALGA4SA_1568 [Olavius algarvensis Delta 1 endosymbiont] diamond 1650 113 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius algarvensis Delta 1 endosymbiont
27612535 27612535 PRJNA393181_S_NODE_21104_length_255_cov_2.669725_g20998_i0 PRJNA393181 21104 255 2.669725 6.80779875 Persicimonas sp. 2766932 Bacteria Bacteria 46.2 0.00253   NR MFP4599860.1 2766932 g20998 i0 65.6 0.376470588235294 32 11 37.6 0 2 97 543 574 MFP4599860.1 tetratricopeptide repeat protein [Persicimonas sp.] diamond 96 46.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas sp.
28607998 28607998 PRJNA393181_S_NODE_14847_length_312_cov_3.127273_g14741_i0 PRJNA393181 14847 312 3.127273 9.75709176 Pseudomonadota 1224 Bacteria Bacteria 137 3.13e-39   NR OGQ84840.1 1797892 g14741 i0 75.8 1.75 91 22 87.5 0 311 39 45 135 OGQ84840.1 MAG: hypothetical protein A3G40_05455 [Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_57_22] diamond 546 137 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_57_22
31672306 31672306 PRJNA393181_S_NODE_5797_length_483_cov_3.959641_g5691_i0 PRJNA393181 5797 483 3.959641 19.12506603 Pseudomonadota 1224 Bacteria Bacteria 181 8.879999999999998e-55   NR MFI5399844.1 2024889 g5691 i0 66.7 3 120 40 74.5 0 483 124 75 194 MFI5399844.1 mobile mystery protein B [SAR324 cluster bacterium] diamond 1449 182 0.994505494505495 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;