RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA393181", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA393181 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13831947 13831947 PRJNA393181_S_NODE_29991_length_205_cov_1.630952_g29885_i0 PRJNA393181 29991 205 1.630952 3.3434516 Parachlamydia 83551 Bacteria Bacteria 374 3.3599999999999997e-99   NTclustered gi|470491594|ref|NR_077046.1| 83552 g29885 i0 99.512 103.151219512195 205 1 100 0 1 205 245 41 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 21146 374 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
24030095 24030095 PRJNA393181_S_NODE_20699_length_258_cov_2.244344_g20593_i0 PRJNA393181 20699 258 2.244344 5.79040752 Parachlamydia 83551 Bacteria Bacteria 472 1.52e-128   NTclustered gi|470491594|ref|NR_077046.1| 83552 g20593 i0 99.612 174.395348837209 258 1 100 0 1 258 228 485 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 44994 472 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;