RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA393181", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA393181 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21480404 21480404 PRJNA393181_S_NODE_7637_length_431_cov_2.395939_g7531_i0 PRJNA393181 7637 431 2.395939 10.32649709 FCB group 1783270 Bacteria Bacteria 119 4.04e-22   NTclustered gi|193087197|gb|CP001100.1| 517418 g7531 i0 95.89 19.3155452436195 73 3 17 0 251 323 1905152 1905224 Chloroherpeton thalassium ATCC 35110, complete genome blastn 8325 119 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae Chloroherpeton Chloroherpeton thalassium
30265170 30265170 PRJNA393181_S_NODE_18012_length_280_cov_2.271605_g17906_i0 PRJNA393181 18012 280 2.271605 6.360494 Chlorobium limicola 1092 Bacteria Bacteria 46.6 4e-4   NR NTV07235.1 1092 g17906 i0 56.4 0.417857142857143 39 17 41.8 0 2 118 58 96 NTV07235.1 tetratricopeptide repeat protein [Chlorobium limicola] diamond 117 46.6 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium limicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;