RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA393181", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Handelsmaniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Handelsmaniibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA393181 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22086901 22086901 PRJNA393181_S_NODE_2738_length_631_cov_3.365320_g2656_i0 PRJNA393181 2738 631 3.36532 21.2351692 Bacteria 2 Bacteria Bacteria 261 2.55e-84   NR OGG50893.1 1817868 g2656 i0 64 8.97622820919176 189 68 89.9 0 569 3 1 189 OGG50893.1 MAG: amidohydrolase [Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10] diamond 5664 261 1 Bacteria Bacteria candidate phyla   Candidatus Handelsmaniibacteriota         Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;