RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA390533", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 6 ✖

tax_phylum 1

  • Kitrinoviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA390533 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5513449 5513449 PRJNA390533_P_NODE_28865_length_265_cov_19.619469_g27838_i0 PRJNA390533 28865 265 19.619469 51.99159285 Carlavirus latensascalonici 3427763 Viruses Viruses 446 9.51e-121   NTclustered gi|1722560148|gb|MN059200.1| 12458 g27838 i0 99.59 92.1962264150943 244 1 92 0 22 265 8118 8361 Garlic latent virus isolate G17-1, complete genome blastn 24432 446 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensascalonici
7456082 7456082 PRJNA390533_P_NODE_27606_length_282_cov_5.802469_g26579_i0 PRJNA390533 27606 282 5.802469 16.36296258 Tobamovirus 12234 Viruses Viruses 472 1.6799999999999998e-128   NTclustered gi|2463200702|gb|ON987477.1| 12253 g26579 i0 99.614 91.6028368794326 259 0 92 1 1 259 3817 3560 Tomato mosaic virus isolate NPPO-NL 41833930 RdRp, small replicase subunit, MP, and CP genes, complete cds blastn 25832 472 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
10613409 10613409 PRJNA390533_P_NODE_2009_length_1223_cov_59.903716_g1695_i0 PRJNA390533 2009 1223 59.903716 732.62244668 Bromovirus BMV 3427622 Viruses Viruses 2069 0   NTclustered gi|320091636|gb|GU584129.1| 12302 g1695 i0 97.832 39.3385118560916 1199 24 98 1 3 1201 1197 1 Brome mosaic virus strain BMV-CZ segment RNA3, complete sequence blastn 48111 2069 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Bromovirus Bromovirus BMV
14438420 14438420 PRJNA390533_P_NODE_18132_length_416_cov_6.257294_g17113_i0 PRJNA390533 18132 416 6.257294 26.03034304 Tobamovirus capsici 3432865 Viruses Viruses 713 0   NTclustered gi|1927969406|gb|MW012414.1| 12239 g17113 i0 99.242 89.2427884615385 396 2 95 1 1 395 3830 3435 Pepper mild mottle virus isolate VPCP, complete genome blastn 37125 713 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
19535811 19535811 PRJNA390533_P_NODE_96_length_2953_cov_136.388813_g74_i0 PRJNA390533 96 2953 136.388813 4027.56164789 Tobamovirus tomatotessellati 3432892 Viruses Viruses 5337 0   NTclustered gi|1821461811|gb|MN267904.1| 12253 g74 i0 99.658 98.7074161869285 2921 9 99 1 12 2932 2920 1 Tomato mosaic virus isolate ToMV_WW17-I-f16-18-Nocc-pos2, complete genome blastn 291483 5337 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
25304312 25304312 PRJNA390533_P_NODE_33520_length_219_cov_1.366667_g32493_i0 PRJNA390533 33520 219 1.366667 2.99300073 root 1 Root_unresolved Root_unresolved 357 3.67e-94   NTclustered gi|2575892337|gb|OR233204.1| 112229 g32493 i0 99 47.2511415525114 200 0 90 1 22 219 6166 6365 Pepino mosaic virus isolate DSMZ PV-0975, complete genome blastn 10348 357 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;