RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA390533" and tax_phylum = "Chlorobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA390533 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27770453 27770453 PRJNA390533_P_NODE_37584_length_192_cov_2.405229_g36557_i0 PRJNA390533 37584 192 2.405229 4.61803968 Chloroherpetonaceae bacterium 2969135 Bacteria Bacteria 62.4 2.18e-9   NR MCS6989152.1 2969135 g36557 i0 47.4 2.671875 57 30 89.1 0 173 3 239 295 MCS6989152.1 PAS domain S-box protein [Chloroherpetonaceae bacterium] diamond 513 62.4 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae   Chloroherpetonaceae bacterium
30328564 30328564 PRJNA390533_P_NODE_28772_length_267_cov_1.289474_g27745_i0 PRJNA390533 28772 267 1.289474 3.44289558 Chlorobiota bacterium 2268192 Bacteria Bacteria 98.2 1.63e-21   NR MDB5033959.1 2268192 g27745 i0 53.5 0.966292134831461 86 40 96.6 0 10 267 652 737 MDB5033959.1 polynucleotide 3-phosphatase [Chlorobiota bacterium] diamond 258 98.2 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;