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contig_metadata

33 rows where bioproject = "PRJNA390533", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 33 ✖

tax_kingdom 1

  • Pseudomonadati · 33 ✖

bioproject 1

  • PRJNA390533 · 33 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4236566 4236566 PRJNA390533_P_NODE_13524_length_517_cov_1.922594_g12553_i0 PRJNA390533 13524 517 1.922594 9.93981098 Polyangium aurulentum 2567896 Bacteria Bacteria 156 3.75e-33   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g12553 i0 78.175 0.851063829787234 252 49 48 6 1 249 6458650 6458898 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 440 156 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
8063179 8063179 PRJNA390533_P_NODE_4727_length_882_cov_10.610913_g4120_i0 PRJNA390533 4727 882 10.610913 93.58825266 Polyangiaceae bacterium 2268199 Bacteria Bacteria 291 1.56e-95   NR HEY4105403.1 2268199 g4120 i0 75.7 1.89115646258503 185 45 62.9 0 30 584 55 239 HEY4105403.1 DUF5131 family protein [Polyangiaceae bacterium] diamond 1668 291 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
10613457 10613457 PRJNA390533_P_NODE_24969_length_316_cov_1.249097_g23942_i0 PRJNA390533 24969 316 1.249097 3.94714652 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 87.9 8.11e-13   NTclustered gi|2108117163|gb|CP070734.1| 2026735 g23942 i0 88.889 0.455696202531646 72 6 22 2 3 73 924371 924301 MAG: Deltaproteobacteria bacterium isolate bin407 chromosome blastn 144 87.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
10613458 10613458 PRJNA390533_P_NODE_25009_length_316_cov_1.220217_g23982_i0 PRJNA390533 25009 316 1.220217 3.85588572 Chondromyces crocatus 52 Bacteria Bacteria 76.8 1.76e-9   NTclustered gi|908353314|gb|CP012159.1| 52 g23982 i0 91.228 6.38607594936709 57 3 18 2 7 62 582165 582110 Chondromyces crocatus strain Cm c5, complete genome blastn 2018 76.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
13163566 13163566 PRJNA390533_P_NODE_39991_length_181_cov_0.985915_g38964_i0 PRJNA390533 39991 181 0.985915 1.78450615 Archangium primigenium 2792470 Bacteria Bacteria 115 1.4099999999999998e-31   NR WP_204484467.1 2792470 g38964 i0 82.8 0.961325966850829 58 10 96.1 0 6 179 41 98 WP_204484467.1 DUF779 domain-containing protein [Archangium primigenium] diamond 174 115 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Melittangium [Archangium] primigenium
13163617 13163617 PRJNA390533_P_NODE_45771_length_161_cov_1.204918_g44744_i0 PRJNA390533 45771 161 1.204918 1.93991798 Archangium violaceum 83451 Bacteria Bacteria 115 1.68e-21   NTclustered gi|1985695619|gb|CP069396.1| 83451 g44744 i0 84.034 0.739130434782609 119 19 74 0 6 124 7596904 7597022 Archangium violaceum strain SDU8 chromosome, complete genome blastn 119 115 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
13831592 13831592 PRJNA390533_P_NODE_19471_length_394_cov_1.611268_g18449_i0 PRJNA390533 19471 394 1.611268 6.34839592 Archangium 47 Bacteria Bacteria 118 5.91e-28   NR WP_395837534.1 83451 g18449 i0 48.5 2.04822335025381 134 61 99 3 1 390 390 519 WP_395837534.1 hypothetical protein [Archangium violaceum] diamond 807 118 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
14438575 14438575 PRJNA390533_P_NODE_31332_length_238_cov_2.130653_g30305_i0 PRJNA390533 31332 238 2.130653 5.0709541400000004 Corallococcus exiguus 83462 Bacteria Bacteria 125 3.28e-33   NR WP_206875127.1 83462 g30305 i0 77.9 0.970588235294118 77 17 97.1 0 6 236 8 84 WP_206875127.1 alpha/beta fold hydrolase [Corallococcus exiguus] diamond 231 125 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus exiguus
15105907 15105907 PRJNA390533_P_NODE_37472_length_193_cov_1.519481_g36445_i0 PRJNA390533 37472 193 1.519481 2.93259833 Haliangium 162027 Bacteria Bacteria 156 1.23e-33   NTclustered gi|470485361|ref|NR_076697.1| 80816 g36445 i0 83.429 71.4507772020725 175 22 89 7 1 171 209 38 Haliangium ochraceum strain SMP-2 23S ribosomal RNA gene, complete sequence blastn 13790 156 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium ochraceum
16987283 16987283 PRJNA390533_P_NODE_40174_length_180_cov_1.276596_g39147_i0 PRJNA390533 40174 180 1.276596 2.2978728 Nannocystis punicea 2995304 Bacteria Bacteria 58.4 3.28e-4   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g39147 i0 100 0.505555555555556 31 0 17 0 20 50 10580304 10580274 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 91 58.4 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea
20811093 20811093 PRJNA390533_P_NODE_11077_length_585_cov_50.532967_g10169_i0 PRJNA390533 11077 585 50.532967 295.61785695 Pendulispora brunnea 2905690 Bacteria Bacteria 961 0   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g10169 i0 97.345 147.411965811966 565 15 97 0 21 585 7408910 7408346 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 86236 961 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
20811210 20811210 PRJNA390533_P_NODE_18297_length_414_cov_1.621333_g17278_i0 PRJNA390533 18297 414 1.621333 6.71231862 Pseudomyxococcus hansupus 1297742 Bacteria Bacteria 228 6.159999999999999e-55   NTclustered gi|891158403|gb|CP012109.1| 1297742 g17278 i0 91.515 27.43961352657 165 14 40 0 22 186 7324657 7324493 Myxococcus hansupus strain mixupus chromosome, complete genome blastn 11360 228 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pseudomyxococcus Pseudomyxococcus hansupus
24636061 24636061 PRJNA390533_P_NODE_24980_length_316_cov_1.241877_g23953_i0 PRJNA390533 24980 316 1.241877 3.92433132 Minicystis rosea 888845 Bacteria Bacteria 87.9 8.11e-13   NTclustered gi|1127353251|gb|CP016211.1| 888845 g23953 i0 86.42 18.2341772151899 81 9 25 2 237 316 10526975 10527054 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 5762 87.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
26695298 26695298 PRJNA390533_P_NODE_26461_length_300_cov_2.172414_g25434_i0 PRJNA390533 26461 300 2.172414 6.517242 Polyangiales bacterium 3034171 Bacteria Bacteria 131 8.769999999999998e-35   NR MFO0649739.1 3034171 g25434 i0 75.3 1.72 85 19 85 2 298 44 237 319 MFO0649739.1 hypothetical protein [Polyangiales bacterium] diamond 516 131 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
26917090 26917090 PRJNA390533_P_NODE_37682_length_192_cov_1.267974_g36655_i0 PRJNA390533 37682 192 1.267974 2.43451008 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 71.2 1.5e-12   NR MCZ6623586.1 2026735 g36655 i0 82.9 1.28125 41 7 64.1 0 189 67 68 108 MCZ6623586.1 tetratricopeptide repeat protein [Deltaproteobacteria bacterium] diamond 246 71.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27106705 27106705 PRJNA390533_P_NODE_1142_length_1484_cov_14.403460_g940_i0 PRJNA390533 1142 1484 14.40346 213.7473464 Kofleriaceae bacterium 2212474 Bacteria Bacteria 46.2 0.0435   NR HEY0990064.1 2212474 g940 i0 37.7 0.139487870619946 69 42 13.9 1 312 518 64 131 HEY0990064.1 hypothetical protein [Kofleriaceae bacterium] diamond 207 46.2 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
27359911 27359911 PRJNA390533_P_NODE_50143_length_151_cov_1.116071_g49116_i0 PRJNA390533 50143 151 1.116071 1.68526721 Myxococcota bacterium 2818507 Bacteria Bacteria 59.3 1.49e-8   NR HTF32786.1 2818507 g49116 i0 63.4 0.814569536423841 41 15 81.5 0 127 5 67 107 HTF32786.1 site-specific integrase [Myxococcota bacterium] diamond 123 59.3 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
27440048 27440048 PRJNA390533_P_NODE_41043_length_176_cov_1.722628_g40016_i0 PRJNA390533 41043 176 1.722628 3.03182528 Pseudomonadati 3379134 Bacteria Bacteria 89.7 8.47e-21   NR WP_204222987.1 83451 g40016 i0 67.3 4.72159090909091 55 18 93.8 0 5 169 80 134 WP_204222987.1 DNA topology modulation protein [Archangium violaceum] diamond 831 90.1 0.995560488346282 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
27549144 27549144 PRJNA390533_P_NODE_50904_length_150_cov_1.081081_g49877_i0 PRJNA390533 50904 150 1.081081 1.6216215 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 81.3 1.56e-16   NR MBW1715326.1 2026735 g49877 i0 77.6 3.84 49 11 98 0 2 148 292 340 MBW1715326.1 chemotaxis response regulator protein-glutamate methylesterase [Deltaproteobacteria bacterium] diamond 576 81.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28496568 28496568 PRJNA390533_P_NODE_48927_length_153_cov_1.500000_g47900_i0 PRJNA390533 48927 153 1.5 2.295 Myxococcota bacterium 2818507 Bacteria Bacteria 52.8 1.12e-6   NR HEY8153580.1 2818507 g47900 i0 54.5 1.76470588235294 44 20 86.3 0 16 147 41 84 HEY8153580.1 hypothetical protein [Myxococcota bacterium] diamond 270 52.8 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28559726 28559726 PRJNA390533_P_NODE_48607_length_154_cov_1.226087_g47580_i0 PRJNA390533 48607 154 1.226087 1.88817398 Myxococcota bacterium 2818507 Bacteria Bacteria 42 0.0212   NR MEZ4318751.1 2818507 g47580 i0 42.6 1.87012987012987 47 27 91.6 0 144 4 121 167 MEZ4318751.1 MBL fold metallo-hydrolase [Myxococcota bacterium] diamond 288 42 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28811866 28811866 PRJNA390533_P_NODE_7328_length_726_cov_12.848617_g6585_i0 PRJNA390533 7328 726 12.848617 93.28095942 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 59.3 3.91e-6   NR RYF08191.1 2026735 g6585 i0 36.5 0.396694214876033 96 59 39.7 2 309 22 154 247 RYF08191.1 MAG: hypothetical protein EOO40_07990, partial [Deltaproteobacteria bacterium] diamond 288 59.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29349029 29349029 PRJNA390533_P_NODE_34649_length_211_cov_1.110465_g33622_i0 PRJNA390533 34649 211 1.110465 2.34308115 Anaeromyxobacteraceae bacterium 2510643 Bacteria Bacteria 83.2 1.07e-16   NR HZY05870.1 2510643 g33622 i0 56.7 2.85781990521327 67 29 95.3 0 2 202 292 358 HZY05870.1 CaiB/BaiF CoA-transferase family protein [Anaeromyxobacteraceae bacterium] diamond 603 83.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae   Anaeromyxobacteraceae bacterium
29586449 29586449 PRJNA390533_P_NODE_46470_length_159_cov_1.441667_g45443_i0 PRJNA390533 46470 159 1.441667 2.29225053 Pseudomonadati 3379134 Bacteria Bacteria 76.6 1.04e-14   NR MCB9527013.1 2026763 g45443 i0 72.3 2.67924528301887 47 13 88.7 0 157 17 102 148 MCB9527013.1 di-heme enzyme [Myxococcales bacterium] diamond 426 76.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30201415 30201415 PRJNA390533_P_NODE_29452_length_259_cov_1.131818_g28425_i0 PRJNA390533 29452 259 1.131818 2.93140862 Myxococcota bacterium 2818507 Bacteria Bacteria 65.5 2.09e-10   NR MFK7896151.1 2818507 g28425 i0 87.9 0.764478764478765 33 4 38.2 0 161 259 1 33 MFK7896151.1 sulfotransferase family protein [Myxococcota bacterium] diamond 198 65.5 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30201420 30201420 PRJNA390533_P_NODE_36252_length_200_cov_1.447205_g35225_i0 PRJNA390533 36252 200 1.447205 2.89441 Myxococcales bacterium 2026763 Bacteria Bacteria 44.3 0.00574   NR RYE82208.1 2026763 g35225 i0 62.1 0.435 29 11 43.5 0 195 109 86 114 RYE82208.1 MAG: hypothetical protein EOO75_21045, partial [Myxococcales bacterium] diamond 87 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30265143 30265143 PRJNA390533_P_NODE_1572_length_1327_cov_14.048913_g940_i1 PRJNA390533 1572 1327 14.048913 186.42907551 Kofleriaceae bacterium 2212474 Bacteria Bacteria 46.2 0.0381   NR HEY0990064.1 2212474 g940 i1 37.7 0.155990957045968 69 42 15.6 1 155 361 64 131 HEY0990064.1 hypothetical protein [Kofleriaceae bacterium] diamond 207 46.2 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
30612266 30612266 PRJNA390533_P_NODE_9553_length_636_cov_1.812395_g8700_i0 PRJNA390533 9553 636 1.812395 11.5268322 Polyangiaceae bacterium 2268199 Bacteria Bacteria 166 2.48e-43   NR MFO0590844.1 2268199 g8700 i0 60.3 1.44339622641509 151 60 71.2 0 182 634 76 226 MFO0590844.1 hypothetical protein [Polyangiaceae bacterium] diamond 918 166 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31307504 31307504 PRJNA390533_P_NODE_24995_length_316_cov_1.231047_g23968_i0 PRJNA390533 24995 316 1.231047 3.89010852 Myxococcota bacterium 2818507 Bacteria Bacteria 50.8 1.19e-4   NR MEM7152476.1 2818507 g23968 i0 87.5 0.227848101265823 24 3 22.8 0 243 314 271 294 MEM7152476.1 serine/threonine-protein kinase [Myxococcota bacterium] diamond 72 50.8 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
31307522 31307522 PRJNA390533_P_NODE_49495_length_152_cov_1.185841_g48468_i0 PRJNA390533 49495 152 1.185841 1.80247832 Minicystis sp. 1971901 Bacteria Bacteria 63.2 5.69e-10   NR MFT3776024.1 1971901 g48468 i0 60 0.986842105263158 50 20 98.7 0 152 3 167 216 MFT3776024.1 AraC family transcriptional regulator [Minicystis sp.] diamond 150 63.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis sp.
32130253 32130253 PRJNA390533_P_NODE_37578_length_192_cov_2.581699_g36551_i0 PRJNA390533 37578 192 2.581699 4.95686208 Polyangia bacterium 3058050 Bacteria Bacteria 42.7 0.0191   NR HEY2900423.1 3058050 g36551 i0 70.8 0.375 24 7 37.5 0 176 105 1 24 HEY2900423.1 phage tail protein [Polyangia bacterium] diamond 72 42.7 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
32730528 32730528 PRJNA390533_P_NODE_46480_length_159_cov_1.375000_g45453_i0 PRJNA390533 46480 159 1.375 2.18625 Myxococcota bacterium 2818507 Bacteria Bacteria 44.7 0.00244   NR MEQ1505281.1 2818507 g45453 i0 48.1 0.981132075471698 52 27 98.1 0 2 157 125 176 MEQ1505281.1 tetratricopeptide repeat protein [Myxococcota bacterium] diamond 156 44.7 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32730533 32730533 PRJNA390533_P_NODE_49840_length_151_cov_1.750000_g48813_i0 PRJNA390533 49840 151 1.75 2.6425 Polyangia bacterium 3058050 Bacteria Bacteria 80.9 4.64e-17   NR HLK90358.1 3058050 g48813 i0 79.6 3.89403973509934 49 10 97.4 0 3 149 138 186 HLK90358.1 NAD(P)-binding domain-containing protein [Polyangia bacterium] diamond 588 80.9 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;