RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where bioproject = "PRJNA390533" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 15 ✖

bioproject 1

  • PRJNA390533 · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
409851 409851 PRJNA390533_P_NODE_4621_length_891_cov_5.515258_g4017_i0 PRJNA390533 4621 891 5.515258 49.14094878 Halovalidus salilacus 3075124 Archaea Archaea 54.7 0.025   NTclustered gi|2581323319|gb|CP134700.1| 3075124 g4017 i0 100 0.0325476992143659 29 0 3 0 385 413 3648312 3648340 Halovalidus salilacus strain CCL63 chromosome, complete genome blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halovalidus Halovalidus salilacus
10613469 10613469 PRJNA390533_P_NODE_26109_length_306_cov_2.101124_g25082_i0 PRJNA390533 26109 306 2.101124 6.42943944 Halomicrobium sp. HM KBTZ05 3242663 Archaea Archaea 84.2 1.01e-11   NTclustered gi|2794134197|gb|CP168057.1| 3242663 g25082 i0 85.185 4.46078431372549 81 12 26 0 1 81 792059 791979 Halomicrobium sp. HM KBTZ05 chromosome, complete genome blastn 1365 84.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halomicrobium Halomicrobium sp. HM KBTZ05
14438655 14438655 PRJNA390533_P_NODE_39612_length_182_cov_1.972028_g38585_i0 PRJNA390533 39612 182 1.972028 3.58909096 halophilic archaeon DL31 756883 Archaea Archaea 71.3 4.27e-8   NTclustered gi|344319636|gb|CP002988.1| 756883 g38585 i0 97.561 0.725274725274725 41 1 23 0 54 94 596487 596527 Halophilic archaeon DL31 chromosome, complete genome blastn 132 71.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales     halophilic archaeon DL31
27075242 27075242 PRJNA390533_P_NODE_34902_length_209_cov_1.588235_g33875_i0 PRJNA390533 34902 209 1.588235 3.31941115 Thermoplasmata archaeon 1906666 Archaea Archaea 52.4 9.54e-6   NR MFQ6060303.1 1906666 g33875 i0 46 0.717703349282297 50 27 71.8 0 7 156 276 325 MFQ6060303.1 ATPase domain-containing protein [Thermoplasmata archaeon] diamond 150 52.4 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
27454677 27454677 PRJNA390533_P_NODE_13923_length_507_cov_1.297009_g12944_i0 PRJNA390533 13923 507 1.297009 6.57583563 Halobacteriales archaeon QS_8_69_26 1919187 Archaea Archaea 70.9 3.46e-11   NR PSQ19632.1 1919187 g12944 i0 57.7 1.06508875739645 52 22 30.8 0 391 236 185 236 PSQ19632.1 MAG: cyclase [Halobacteriales archaeon QS_8_69_26] diamond 540 70.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales     Halobacteriales archaeon QS_8_69_26
29285649 29285649 PRJNA390533_P_NODE_38489_length_188_cov_0.946309_g37462_i0 PRJNA390533 38489 188 0.946309 1.77906092 Methanobacteriota archaeon 2026739 Archaea Archaea 54.7 1.09e-6   NR TLZ60410.1 2026739 g37462 i0 50 0.957446808510638 60 27 95.7 1 181 2 292 348 TLZ60410.1 MAG: hypothetical protein E6K13_08345 [Methanobacteriota archaeon] diamond 180 54.7 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
29727528 29727528 PRJNA390533_P_NODE_25530_length_315_cov_1.630435_g24503_i0 PRJNA390533 25530 315 1.630435 5.13587025 Methanobacteriota archaeon 2026739 Archaea Archaea 45.8 0.00117   NR MEA3323612.1 2026739 g24503 i0 30.6 0.80952380952381 85 58 80 1 1 252 8 92 MEA3323612.1 tetratricopeptide repeat protein [Methanobacteriota archaeon] diamond 255 45.8 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
30075136 30075136 PRJNA390533_P_NODE_36432_length_199_cov_1.243750_g35405_i0 PRJNA390533 36432 199 1.24375 2.4750625 Methanococcoides sp. NM1 1201013 Archaea Archaea 53.1 4.33e-6   NR WP_135605603.1 1201013 g35405 i0 41 0.919597989949749 61 36 92 0 188 6 302 362 WP_135605603.1 BREX-1 system phosphatase PglZ type A [Methanococcoides sp. NM1] diamond 183 53.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanococcoides Methanococcoides sp. NM1
30454716 30454716 PRJNA390533_P_NODE_33413_length_220_cov_1.149171_g32386_i0 PRJNA390533 33413 220 1.149171 2.5281762 Candidatus Methanophagaceae archaeon 3386247 Archaea Archaea 107 3.67e-25   NR KAF5433530.1 3386247 g32386 i0 68.1 7.85454545454545 72 23 98.2 0 218 3 81 152 KAF5433530.1 SEFIR domain-containing protein [Candidatus Methanophagaceae archaeon] diamond 1728 107 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Methanophagales Candidatus Methanophagaceae   Candidatus Methanophagaceae archaeon
30896928 30896928 PRJNA390533_P_NODE_25374_length_316_cov_1.003610_g24347_i0 PRJNA390533 25374 316 1.00361 3.1714076 Candidatus Poseidoniales archaeon 2163009 Archaea Archaea 46.6 0.00355   NR MEK9698609.1 2163009 g24347 i0 76.9 0.740506329113924 26 6 24.7 0 314 237 90 115 MEK9698609.1 terminase family protein [Candidatus Poseidoniales archaeon] diamond 234 46.6 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales     Candidatus Poseidoniales archaeon
31086350 31086350 PRJNA390533_P_NODE_42455_length_171_cov_1.234848_g41428_i0 PRJNA390533 42455 171 1.234848 2.11159008 Natronococcus wangiae 3068275 Archaea Archaea 83.2 6.04e-17   NR WP_306052390.1 3068275 g41428 i0 64.3 1.96491228070175 56 20 98.2 0 169 2 158 213 WP_306052390.1 cation:proton antiporter [Natronococcus wangiae] diamond 336 83.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronococcus Natronococcus wangiae
31086354 31086354 PRJNA390533_P_NODE_46575_length_159_cov_1.108333_g45548_i0 PRJNA390533 46575 159 1.108333 1.76224947 Natronococcus wangiae 3068275 Archaea Archaea 60.5 6.39e-9   NR WP_306052390.1 3068275 g45548 i0 62 14.4716981132075 50 19 94.3 0 9 158 288 337 WP_306052390.1 cation:proton antiporter [Natronococcus wangiae] diamond 2301 60.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronococcus Natronococcus wangiae
31197534 31197534 PRJNA390533_P_NODE_30815_length_244_cov_0.824390_g29788_i0 PRJNA390533 30815 244 0.82439 2.0115116 root 1 Root_unresolved Root_unresolved 52 1.19e-6   NR WP_240950869.1 59277 g29788 i0 57.5 1.04508196721311 40 17 49.2 0 8 127 13 52 WP_240950869.1 tetratricopeptide repeat protein [Methanobacterium subterraneum] diamond 255 52 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium subterraneum
31419271 31419271 PRJNA390533_P_NODE_37696_length_192_cov_1.130719_g36669_i0 PRJNA390533 37696 192 1.130719 2.17098048 Methanobacterium 2160 Archaea Archaea 45.1 0.00221   NR AXV38124.1 2025350 g36669 i0 51.4 4.734375 35 17 54.7 0 191 87 38 72 AXV38124.1 MAG: pilus assembly protein PilF [Methanobacterium sp. BRmetb2] diamond 909 45.4 0.993392070484582 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. BRmetb2
31971819 31971819 PRJNA390533_P_NODE_50958_length_150_cov_0.945946_g49931_i0 PRJNA390533 50958 150 0.945946 1.418919 Candidatus Methanogaster sp. ANME-2c ERB4 2759911 Archaea Archaea 44.3 0.00309   NR QNO50037.1 2759911 g49931 i0 52.3 0.88 44 20 86 1 10 138 506 549 QNO50037.1 hypothetical protein MMAJBCMK_00020 [Candidatus Methanogaster sp. ANME-2c ERB4] diamond 132 44.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanogasteraceae Candidatus Methanogaster Candidatus Methanogaster sp. ANME-2c ERB4

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;