RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA390533", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA390533 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21479767 21479767 PRJNA390533_P_NODE_24057_length_324_cov_2.694737_g23031_i0 PRJNA390533 24057 324 2.694737 8.73094788 Bacteria 2 Bacteria Bacteria 119 2.96e-22   NTclustered gi|297181813|gb|GU474879.1| 710831 g23031 i0 84.298 1.62654320987654 121 19 37 0 29 149 14823 14703 Uncultured delta proteobacterium HF0200_19J16 genomic sequence blastn 527 119 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0200_19J16
29854207 29854207 PRJNA390533_P_NODE_50471_length_150_cov_1.891892_g49444_i0 PRJNA390533 50471 150 1.891892 2.837838 Bradymonas sediminis 1548548 Bacteria Bacteria 77 4.62e-15   NR WP_111331043.1 1548548 g49444 i0 71.4 1.96 49 14 98 0 149 3 186 234 WP_111331043.1 tRNA dihydrouridine(20/20a) synthase DusA [Bradymonas sediminis] diamond 294 77 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis
31465955 31465955 PRJNA390533_P_NODE_45396_length_162_cov_1.195122_g44369_i0 PRJNA390533 45396 162 1.195122 1.93609764 Bradymonadaceae bacterium 2740543 Bacteria Bacteria 78.6 2.25e-16   NR MFB6371811.1 2740543 g44369 i0 67.9 7.85185185185185 53 17 98.1 0 3 161 109 161 MFB6371811.1 NADH-quinone oxidoreductase subunit J [Bradymonadaceae bacterium] diamond 1272 78.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae   Bradymonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;