RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA390533", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA390533 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18261155 18261155 PRJNA390533_P_NODE_1675_length_1297_cov_17.182830_g1397_i0 PRJNA390533 1675 1297 17.18283 222.8613051 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 639 4.9899999999999975e-227   NR GKY94468.1 2872254 g1397 i0 74.2 0.966846569005397 418 91 93.4 5 1273 62 8 422 GKY94468.1 hypothetical protein MPSEU_000412700 [Mayamaea pseudoterrestris] diamond 1254 639 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris
28970080 28970080 PRJNA390533_P_NODE_40188_length_180_cov_1.156028_g39161_i0 PRJNA390533 40188 180 1.156028 2.0808504 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 44.7 0.00323   NR GKZ00607.1 2872254 g39161 i0 59.4 0.533333333333333 32 13 53.3 0 20 115 267 298 GKZ00607.1 hypothetical protein MPSEU_001012900 [Mayamaea pseudoterrestris] diamond 96 44.7 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;