RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA390533", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA390533 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28671240 28671240 PRJNA390533_P_NODE_16607_length_445_cov_5.889163_g15595_i0 PRJNA390533 16607 445 5.889163 26.20677535 Pseudomonadati 3379134 Bacteria Bacteria 210 1.05e-62   NR MDD2404534.1 2793042 g15595 i0 100 1.38876404494382 103 0 69.4 0 331 23 153 255 MDD2404534.1 DUF262 domain-containing protein [Victivallaceae bacterium] diamond 618 210 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
30201426 30201426 PRJNA390533_P_NODE_44552_length_164_cov_1.568000_g43525_i0 PRJNA390533 44552 164 1.568 2.57152 Victivallales bacterium 2212475 Bacteria Bacteria 76.3 1.93e-14   NR MBO4620265.1 2212475 g43525 i0 66.7 0.878048780487805 48 16 87.8 0 1 144 232 279 MBO4620265.1 alpha-galactosidase [Victivallales bacterium] diamond 144 76.3 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;