RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA390533", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA390533 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31197534 31197534 PRJNA390533_P_NODE_30815_length_244_cov_0.824390_g29788_i0 PRJNA390533 30815 244 0.82439 2.0115116 root 1 Root_unresolved Root_unresolved 52 1.19e-6   NR WP_240950869.1 59277 g29788 i0 57.5 1.04508196721311 40 17 49.2 0 8 127 13 52 WP_240950869.1 tetratricopeptide repeat protein [Methanobacterium subterraneum] diamond 255 52 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium subterraneum
31419271 31419271 PRJNA390533_P_NODE_37696_length_192_cov_1.130719_g36669_i0 PRJNA390533 37696 192 1.130719 2.17098048 Methanobacterium 2160 Archaea Archaea 45.1 0.00221   NR AXV38124.1 2025350 g36669 i0 51.4 4.734375 35 17 54.7 0 191 87 38 72 AXV38124.1 MAG: pilus assembly protein PilF [Methanobacterium sp. BRmetb2] diamond 909 45.4 0.993392070484582 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. BRmetb2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;