RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA390533", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA390533 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19535545 19535545 PRJNA390533_P_NODE_33136_length_222_cov_1.562842_g32109_i0 PRJNA390533 33136 222 1.562842 3.46950924 Cavenderia fasciculata 261658 Evosea other_Eukaryota 124 3.52e-33   NR XP_004359909.1 261658 g32109 i0 73.5 0.918918918918919 68 18 91.9 0 210 7 201 268 XP_004359909.1 S60 ribosomal protein L7 [Cavenderia fasciculata] diamond 204 124 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
28212012 28212012 PRJNA390533_P_NODE_26966_length_292_cov_3.739130_g25939_i0 PRJNA390533 26966 292 3.73913 10.9182596 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 99.4 4.18e-25   NR PRP86519.1 1890364 g25939 i0 87.1 0.636986301369863 62 7 63.7 1 233 48 11 71 PRP86519.1 putative ribosomal protein L38 [Planoprotostelium fungivorum] diamond 186 99.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29822336 29822336 PRJNA390533_P_NODE_8991_length_654_cov_28.026016_g8173_i0 PRJNA390533 8991 654 28.026016 183.29014464 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 53.9 1.42e-4   NR KAH3766102.1 1580589 g8173 i0 28.4 3.80733944954128 169 97 68.3 6 599 153 97 261 KAH3766102.1 hypothetical protein Pelo_1987 [Pelomyxa schiedti] diamond 2490 53.9 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;