RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA390533" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA390533 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13163283 13163283 PRJNA390533_P_NODE_16191_length_454_cov_3.407229_g15184_i0 PRJNA390533 16191 454 3.407229 15.46881966 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 364 4.979999999999998e-96   NTclustered gi|470529412|ref|XM_004368013.1| 1257118 g15184 i0 85.714 3.38986784140969 350 45 76 3 18 363 398 746 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_290930), partial mRNA blastn 1539 364 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19535545 19535545 PRJNA390533_P_NODE_33136_length_222_cov_1.562842_g32109_i0 PRJNA390533 33136 222 1.562842 3.46950924 Cavenderia fasciculata 261658 Evosea other_Eukaryota 124 3.52e-33   NR XP_004359909.1 261658 g32109 i0 73.5 0.918918918918919 68 18 91.9 0 210 7 201 268 XP_004359909.1 S60 ribosomal protein L7 [Cavenderia fasciculata] diamond 204 124 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
24636206 24636206 PRJNA390533_P_NODE_39420_length_183_cov_1.708333_g38393_i0 PRJNA390533 39420 183 1.708333 3.12624939 Vexillifera multispinosa 1105342 Discosea other_Eukaryota 198 1.8899999999999998e-46   NTclustered gi|354720322|gb|HQ687481.1| 1105342 g38393 i0 87.432 62.5081967213115 183 9 100 8 1 183 56 224 Vexillifera multispinosa strain P124 small subunit ribosomal RNA gene, partial sequence blastn 11439 198 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera multispinosa
27454682 27454682 PRJNA390533_P_NODE_23823_length_328_cov_1.802768_g22798_i0 PRJNA390533 23823 328 1.802768 5.91307904 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 67.4 1.64e-10   NR XP_004344951.1 1257118 g22798 i0 41.2 0.777439024390244 85 50 77.7 0 68 322 159 243 XP_004344951.1 uncharacterized protein ACA1_285670, partial [Acanthamoeba castellanii str. Neff] diamond 255 67.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28212012 28212012 PRJNA390533_P_NODE_26966_length_292_cov_3.739130_g25939_i0 PRJNA390533 26966 292 3.73913 10.9182596 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 99.4 4.18e-25   NR PRP86519.1 1890364 g25939 i0 87.1 0.636986301369863 62 7 63.7 1 233 48 11 71 PRP86519.1 putative ribosomal protein L38 [Planoprotostelium fungivorum] diamond 186 99.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29822336 29822336 PRJNA390533_P_NODE_8991_length_654_cov_28.026016_g8173_i0 PRJNA390533 8991 654 28.026016 183.29014464 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 53.9 1.42e-4   NR KAH3766102.1 1580589 g8173 i0 28.4 3.80733944954128 169 97 68.3 6 599 153 97 261 KAH3766102.1 hypothetical protein Pelo_1987 [Pelomyxa schiedti] diamond 2490 53.9 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
30328560 30328560 PRJNA390533_P_NODE_20052_length_384_cov_3.040580_g19029_i0 PRJNA390533 20052 384 3.04058 11.6758272 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 108 2.17e-28   NR XP_004340849.1 1257118 g19029 i0 94.7 0.4453125 57 3 44.5 0 265 95 3 59 XP_004340849.1 uncharacterized protein ACA1_150550 [Acanthamoeba castellanii str. Neff] diamond 171 108 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;