RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA385396", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA385396 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12555209 12555209 PRJNA385396_P_NODE_14210_length_250_cov_0.870056_g14118_i0 PRJNA385396 14210 250 0.870056 2.17514 Bacteria 2 Bacteria Bacteria 79.3 5.32e-15   NR MCM2282129.1 2026715 g14118 i0 48.7 9.408 78 37 92.4 2 20 250 513 588 MCM2282129.1 translational GTPase TypA [Pseudobdellovibrionaceae bacterium] diamond 2352 79.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
13160904 13160904 PRJNA385396_P_NODE_6451_length_334_cov_1.180077_g6359_i0 PRJNA385396 6451 334 1.180077 3.94145718 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 107 3.11e-27   NR MBK9324200.1 2026715 g6359 i0 57.5 6.41317365269461 87 37 78.1 0 31 291 4 90 MBK9324200.1 RNA-binding protein [Pseudobdellovibrionaceae bacterium] diamond 2142 107 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
15709614 15709614 PRJNA385396_P_NODE_16973_length_247_cov_0.885057_g16881_i0 PRJNA385396 16973 247 0.885057 2.18609079 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 156 2.4999999999999993e-43   NR HXH29741.1 2081706 g16881 i0 87.7 0.983805668016194 81 10 98.4 0 4 246 24 104 HXH29741.1 5'-nucleotidase C-terminal domain-containing protein [Bacteriovoracaceae bacterium] diamond 243 156 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
32478269 32478269 PRJNA385396_P_NODE_20479_length_242_cov_0.911243_g20387_i0 PRJNA385396 20479 242 0.911243 2.20520806 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 128 7.04e-33   NR MBK7889904.1 2053517 g20387 i0 76.3 2.96280991735537 80 19 99.2 0 3 242 379 458 MBK7889904.1 type I glutamate--ammonia ligase [Bdellovibrionales bacterium] diamond 717 128 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;