RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA385396", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA385396 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11885946 11885946 PRJNA385396_P_NODE_8770_length_300_cov_1.334802_g8678_i0 PRJNA385396 8770 300 1.334802 4.004406 Phaeodactylum tricornutum CCAP 1 2850 SAR_Eukaryotes SAR_Eukaryotes 117 3.16e-28   NR XP_002183121.1 556484 g8678 i0 60.8 0.97 97 36 95 1 15 299 81 177 XP_002183121.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1] diamond 291 117 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
30643771 30643771 PRJNA385396_P_NODE_5953_length_343_cov_0.855556_g5861_i0 PRJNA385396 5953 343 0.855556 2.93455708 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 53.1 2.56e-5   NR GKZ00868.1 2872254 g5861 i0 45.3 2.96501457725948 53 29 46.4 0 341 183 655 707 GKZ00868.1 hypothetical protein MPSEU_001038500 [Mayamaea pseudoterrestris] diamond 1017 53.1 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris
31861959 31861959 PRJNA385396_P_NODE_7317_length_320_cov_1.327935_g7225_i0 PRJNA385396 7317 320 1.327935 4.249392 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 50.8 1.32e-4   NR KAL3810722.1 382380 g7225 i0 62.8 2.428125 43 15 40.3 1 53 181 734 775 KAL3810722.1 hypothetical protein ACHAXA_008495 [Cyclostephanos tholiformis] diamond 777 51.2 0.9921875 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclostephanos Cyclostephanos tholiformis
32256948 32256948 PRJNA385396_P_NODE_21198_length_241_cov_0.916667_g21106_i0 PRJNA385396 21198 241 0.916667 2.20916747 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 75.5 1.1e-13   NR KAL3783748.1 29204 g21106 i0 49.3 0.883817427385892 71 36 88.4 0 17 229 1356 1426 KAL3783748.1 hypothetical protein HJC23_004867 [Cyclotella cryptica] diamond 213 75.5 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;