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contig_metadata

12 rows where bioproject = "PRJNA385396", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 12 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 12 ✖

bioproject 1

  • PRJNA385396 · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
406817 406817 PRJNA385396_P_NODE_1341_length_623_cov_2.692727_g1250_i0 PRJNA385396 1341 623 2.692727 16.77568921 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 773 0   NTclustered gi|2874253978|emb|OY970303.1| 412054 g1250 i0 89.12 95.8908507223114 625 62 100 6 1 623 3485477 3486097 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 59740 773 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
1076556 1076556 PRJNA385396_P_NODE_701_length_817_cov_1.650538_g618_i0 PRJNA385396 701 817 1.650538 13.48489546 Gemmatimonas 173479 Bacteria Bacteria 592 3.91e-164   NTclustered gi|470475286|ref|NR_076270.1| 173480 g618 i0 80.535 269.700122399021 822 117 98 32 1 802 1643 845 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 220345 592 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
9335286 9335286 PRJNA385396_P_NODE_7368_length_319_cov_3.739837_g7276_i0 PRJNA385396 7368 319 3.739837 11.93008003 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 351 2.63e-92   NTclustered gi|2874253978|emb|OY970303.1| 412054 g7276 i0 89.781 534.865203761756 274 28 87 0 28 301 1904483 1904756 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 170622 351 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
9335312 9335312 PRJNA385396_P_NODE_8088_length_309_cov_1.305085_g7996_i0 PRJNA385396 8088 309 1.305085 4.03271265 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 381 3.239999999999999e-101   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g7996 i0 89.068 168.546925566343 311 28 100 6 1 309 1552977 1552671 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 52081 381 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
13160866 13160866 PRJNA385396_P_NODE_5291_length_357_cov_1.084507_g5199_i0 PRJNA385396 5291 357 1.084507 3.87168999 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 346 1.38e-90   NTclustered gi|2874253789|emb|OY969773.1| 412054 g5199 i0 84.615 4.64425770308123 351 50 97 3 9 356 422031 422380 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 1658 346 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
15104304 15104304 PRJNA385396_P_NODE_17712_length_246_cov_0.890173_g17620_i0 PRJNA385396 17712 246 0.890173 2.18982558 Longimicrobiales bacterium 2910168 Bacteria Bacteria 97.4 2.19e-21   NR HEY0809003.1 2910168 g17620 i0 61.7 1.97560975609756 81 29 98.8 1 3 245 26 104 HEY0809003.1 pyruvate, phosphate dikinase [Longimicrobiales bacterium] diamond 486 97.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
15104306 15104306 PRJNA385396_P_NODE_1932_length_533_cov_3.143478_g1840_i0 PRJNA385396 1932 533 3.143478 16.75473774 Gemmatimonas 173479 Bacteria Bacteria 617 4.11e-172   NTclustered gi|470475286|ref|NR_076270.1| 173480 g1840 i0 87.709 69.0412757973734 537 56 100 9 1 533 560 30 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 36799 617 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
15709725 15709725 PRJNA385396_P_NODE_2193_length_506_cov_2.780600_g2101_i0 PRJNA385396 2193 506 2.7806 14.069836 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 532 1.4499999999999996e-146   NTclustered gi|2874253978|emb|OY970303.1| 412054 g2101 i0 85.853 415.95652173913 516 55 100 16 1 506 5915747 5915240 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 210474 532 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
21478225 21478225 PRJNA385396_P_NODE_17297_length_246_cov_0.890173_g17205_i0 PRJNA385396 17297 246 0.890173 2.18982558 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 108 1.93e-25   NR MEX2570674.1 2026742 g17205 i0 78.2 0.951219512195122 78 17 95.1 0 3 236 125 202 MEX2570674.1 cation:proton antiporter [Gemmatimonadota bacterium] diamond 234 108 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
22083595 22083595 PRJNA385396_P_NODE_6598_length_331_cov_1.647287_g6506_i0 PRJNA385396 6598 331 1.647287 5.45251997 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 435 2.6500000000000003e-117   NTclustered gi|2874253978|emb|OY970303.1| 412054 g6506 i0 90.361 140.027190332326 332 30 100 2 1 331 1903216 1902886 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 46349 435 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
23359208 23359208 PRJNA385396_P_NODE_599_length_879_cov_2.617866_g521_i0 PRJNA385396 599 879 2.617866 23.01104214 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 1181 0   NTclustered gi|2874253728|emb|OY969570.1| 412054 g521 i0 90.981 151.485779294653 887 64 100 14 1 879 172876 171998 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 133156 1181 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
27724274 27724274 PRJNA385396_P_NODE_15484_length_249_cov_0.875000_g15392_i0 PRJNA385396 15484 249 0.875 2.17875 FCB group 1783270 Bacteria Bacteria 46.6 0.00167   NR MEZ4424969.1 2026742 g15392 i0 38.9 3.3855421686747 72 34 83.1 2 3 209 317 381 MEZ4424969.1 hypothetical protein [Gemmatimonadota bacterium] diamond 843 47 0.991489361702128 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;