RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA385396" and tax_clade = "Apusozoa"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA385396 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11885443 11885443 PRJNA385396_P_NODE_11510_length_268_cov_1.579487_g11418_i0 PRJNA385396 11510 268 1.579487 4.23302516 Thecamonas trahens 529818 Root_unresolved Root_unresolved 130 1.1e-25   NTclustered gi|923135134|ref|XM_013905579.1| 461836 g11418 i0 84.615 1.73880597014925 130 20 49 0 107 236 200 71 Thecamonas trahens ATCC 50062 60S ribosomal protein L27a (AMSG_02000), mRNA blastn 466 130 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
18258685 18258685 PRJNA385396_P_NODE_7035_length_324_cov_1.940239_g6943_i0 PRJNA385396 7035 324 1.940239 6.28637436 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 90.5 1.66e-20   NR XP_013755301.1 461836 g6943 i0 44.3 0.981481481481482 106 58 98.1 1 323 6 25 129 XP_013755301.1 uncharacterized protein AMSG_08071 [Thecamonas trahens ATCC 50062] diamond 318 90.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30770467 30770467 PRJNA385396_P_NODE_12114_length_262_cov_1.412698_g12022_i0 PRJNA385396 12114 262 1.412698 3.70126876 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 53.9 5.42e-6   NR XP_013760557.1 461836 g12022 i0 32.5 0.950381679389313 83 54 92.7 1 16 258 67 149 XP_013760557.1 transmembrane protein 181 [Thecamonas trahens ATCC 50062] diamond 249 53.9 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;