RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA385073" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA385073 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6783873 6783873 PRJNA385073_P_NODE_45126_length_249_cov_0.875000_g44964_i0 PRJNA385073 45126 249 0.875 2.17875 Candidatus Minusculum obligatum 1948790 Bacteria Bacteria 268 2.06e-67   NTclustered gi|2862534883|gb|CP174360.1| 1948790 g44964 i0 86.345 35.2248995983936 249 30 100 4 1 249 190593 190837 MAG: Patescibacteria group bacterium UBA2103 chromosome, complete genome blastn 8771 268 1 Bacteria Bacteria candidate phyla   Minisyncoccota Minisyncoccia Candidatus Phycocordibacterales Candidatus Phycocordibacteraceae Candidatus Minusculum Candidatus Minusculum obligatum
26885552 26885552 PRJNA385073_P_NODE_54521_length_243_cov_1.941176_g54359_i0 PRJNA385073 54521 243 1.941176 4.71705768 Minisyncoccota bacterium 2053589 Bacteria Bacteria 120 1.54e-32   NR MBP6925883.1 2053589 g54359 i0 75 4.9382716049382704 80 20 98.8 0 3 242 3 82 MBP6925883.1 30S ribosomal protein S7 [Candidatus Paceibacterota bacterium] diamond 1200 120 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
27359834 27359834 PRJNA385073_P_NODE_27383_length_286_cov_2.553991_g27221_i0 PRJNA385073 27383 286 2.553991 7.30441426 Minisyncoccota bacterium 2053589 Bacteria Bacteria 70.5 6.32e-12   NR MFA5386774.1 2053589 g27221 i0 61 1.20629370629371 59 20 61.9 1 184 8 89 144 MFA5386774.1 ParB N-terminal domain-containing protein [Candidatus Paceibacterota bacterium] diamond 345 70.5 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
27580637 27580637 PRJNA385073_P_NODE_33704_length_269_cov_1.306122_g33542_i0 PRJNA385073 33704 269 1.306122 3.51346818 Minisyncoccota bacterium 2053589 Bacteria Bacteria 157 3.47e-46   NR MFA5932377.1 2053589 g33542 i0 86.5 1.98513011152416 89 12 99.3 0 269 3 74 162 MFA5932377.1 queuosine precursor transporter [Candidatus Paceibacterota bacterium] diamond 534 157 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29980431 29980431 PRJNA385073_P_NODE_31231_length_275_cov_2.623762_g31069_i0 PRJNA385073 31231 275 2.623762 7.2153455 Minisyncoccota bacterium 2053589 Bacteria Bacteria 146 1.95e-39   NR HYD92961.1 2053589 g31069 i0 71.1 2.94545454545455 90 26 98.2 0 2 271 59 148 HYD92961.1 methionine--tRNA ligase [Candidatus Paceibacterota bacterium] diamond 810 146 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32573200 32573200 PRJNA385073_P_NODE_65219_length_200_cov_4.322835_g65057_i0 PRJNA385073 65219 200 4.322835 8.64567 Minisyncoccota bacterium 2053589 Bacteria Bacteria 58.5 6.26e-9   NR HEY6019063.1 2053589 g65057 i0 58.5 0.615 41 17 61.5 0 8 130 75 115 HEY6019063.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 123 58.5 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;