RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA385073" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA385073 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3627143 3627143 PRJNA385073_P_NODE_57943_length_241_cov_1.833333_g57781_i0 PRJNA385073 57943 241 1.833333 4.41833253 Rotaliida 29185 SAR_Eukaryotes SAR_Eukaryotes 187 5.699999999999998e-43   NTclustered gi|998623043|dbj|LC049322.1| 51039 g57781 i0 85.204 19.2323651452282 196 13 78 12 1 187 1684 1872 Neogloboquadrina dutertrei gene for 28S rRNA, partial sequence, isolate: 11-9-T89 blastn 4635 187 1 Eukaryota Sar   Foraminifera   Rotaliida Globorotaliidae Neogloboquadrina Neogloboquadrina dutertrei
19532354 19532354 PRJNA385073_P_NODE_61836_length_230_cov_3.057325_g61674_i0 PRJNA385073 61836 230 3.057325 7.0318475 Trochammina hadai 46140 SAR_Eukaryotes SAR_Eukaryotes 407 3.8e-109   NTclustered gi|1433211046|gb|MF771028.1| 46140 g61674 i0 98.696 39.0217391304348 230 2 100 1 1 230 32 260 Trochammina hadai isolate 96 clone 11 28S ribosomal RNA gene, partial sequence blastn 8975 407 1 Eukaryota Sar   Foraminifera   Textulariida Trochamminidae Trochammina Trochammina hadai

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;