RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA385073" and tax_phylum = "Atribacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Atribacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA385073 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10610087 10610087 PRJNA385073_P_NODE_53809_length_244_cov_0.900585_g53647_i0 PRJNA385073 53809 244 0.900585 2.1974274 uncultured Atribacterota bacterium 263865 Bacteria Bacteria 174 4.5e-39   NTclustered gi|306490911|gb|GU180083.1| 263865 g53647 i0 80.165 451.606557377049 242 41 98 7 5 243 12478 12241 Uncultured candidate division JS1 bacterium clone fosmid vNS2B_16C12 genomic sequence blastn 110192 174 1 Bacteria   Pseudomonadati Atribacterota         uncultured Atribacterota bacterium
14434856 14434856 PRJNA385073_P_NODE_43472_length_250_cov_0.870056_g43310_i0 PRJNA385073 43472 250 0.870056 2.17514 Atribacterota bacterium 2952890 Bacteria Bacteria 166 1.59e-45   NR MDD3631175.1 2952890 g43310 i0 100 5.904 82 0 98.4 0 3 248 918 999 MDD3631175.1 DNA-directed RNA polymerase subunit beta [Atribacterota bacterium] diamond 1476 166 1 Bacteria   Pseudomonadati Atribacterota         Atribacterota bacterium
24632516 24632516 PRJNA385073_P_NODE_42880_length_250_cov_1.451977_g42718_i0 PRJNA385073 42880 250 1.451977 3.6299425 uncultured Atribacterota bacterium 263865 Bacteria Bacteria 76.8 1.34e-9   NTclustered gi|306490880|gb|GU180082.1| 263865 g42718 i0 94 2.556 50 3 20 0 201 250 1169 1120 Uncultured candidate division JS1 bacterium clone fosmid vNS2B_15F10 genomic sequence blastn 639 76.8 1 Bacteria   Pseudomonadati Atribacterota         uncultured Atribacterota bacterium
32035068 32035068 PRJNA385073_P_NODE_43558_length_250_cov_0.870056_g43396_i0 PRJNA385073 43558 250 0.870056 2.17514 Atribacterota bacterium 2952890 Bacteria Bacteria 150 9.08e-44   NR MDY0382254.1 2952890 g43396 i0 92.8 0.996 83 6 99.6 0 250 2 113 195 MDY0382254.1 SPOR domain-containing protein [Atribacterota bacterium] diamond 249 150 1 Bacteria   Pseudomonadati Atribacterota         Atribacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;