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contig_metadata

10 rows where bioproject = "PRJNA385073" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 10 ✖

bioproject 1

  • PRJNA385073 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4233496 4233496 PRJNA385073_P_NODE_57144_length_242_cov_0.911243_g56982_i0 PRJNA385073 57144 242 0.911243 2.20520806 Leptotrichia sp. HMT-225 3058373 Bacteria Bacteria 414 2.41e-111   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g56982 i0 97.521 17.9917355371901 242 6 100 0 1 242 2418024 2417783 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 4354 414 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
6784015 6784015 PRJNA385073_P_NODE_52666_length_244_cov_2.771930_g52504_i0 PRJNA385073 52666 244 2.77193 6.7635092 Fusobacterium varium 856 Bacteria Bacteria 363 8.949999999999999e-96   NTclustered gi|1540073569|emb|LR134390.1| 856 g52504 i0 93.548 477.188524590164 248 8 100 7 1 244 514200 514443 Fusobacterium varium strain NCTC10560 genome assembly, chromosome: 1 blastn 116434 363 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
10004062 10004062 PRJNA385073_P_NODE_12568_length_374_cov_1.657807_g12407_i0 PRJNA385073 12568 374 1.657807 6.20019818 Leptotrichia 32067 Bacteria Bacteria 82.4 4.54e-11   NTclustered gi|1708587163|dbj|AP019846.1| 554406 g12407 i0 86.842 5.83422459893048 76 6 20 4 182 257 372926 372997 Leptotrichia hongkongensis JMUB5056 DNA, complete genome blastn 2182 82.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hongkongensis
10004280 10004280 PRJNA385073_P_NODE_28608_length_283_cov_1.138095_g28446_i0 PRJNA385073 28608 283 1.138095 3.22080885 Leptotrichia 32067 Bacteria Bacteria 523 4.5999999999999983e-144   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g28446 i0 100 489.978798586572 283 0 100 0 1 283 198847 199129 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 138664 523 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
16378938 16378938 PRJNA385073_P_NODE_61813_length_230_cov_3.369427_g61651_i0 PRJNA385073 61813 230 3.369427 7.7496821 Fusobacterium 848 Bacteria Bacteria 409 1.0600000000000001e-109   NTclustered gi|2705042081|gb|CP085192.1| 856 g61651 i0 98.696 448.165217391304 230 3 100 0 1 230 155840 155611 Fusobacterium varium strain SB069 chromosome blastn 103078 409 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
16378951 16378951 PRJNA385073_P_NODE_64613_length_205_cov_10.825758_g64451_i0 PRJNA385073 64613 205 10.825758 22.1928039 Leptotrichia 32067 Bacteria Bacteria 374 3.3599999999999997e-99   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g64451 i0 99.512 387.824390243902 205 1 100 0 1 205 198616 198412 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 79504 374 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
16983343 16983343 PRJNA385073_P_NODE_34574_length_266_cov_4.865285_g34412_i0 PRJNA385073 34574 266 4.865285 12.9416581 Leptotrichia sp. HMT-225 3058373 Bacteria Bacteria 492 1.2099999999999999e-134   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g34412 i0 100 408.808270676692 266 0 100 0 1 266 198173 197908 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 108743 492 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
18927995 18927995 PRJNA385073_P_NODE_65655_length_196_cov_4.666667_g65493_i0 PRJNA385073 65655 196 4.666667 9.14666732 Fusobacterium 848 Bacteria Bacteria 361 2.48e-95   NTclustered gi|15028908|emb|AJ307974.1| 851 g65493 i0 100 481.418367346939 195 0 99 0 2 196 1868 1674 Fusobacterium nucleatum 23S rRNA gene, strain DSM 20482 blastn 94358 361 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
24632460 24632460 PRJNA385073_P_NODE_39840_length_254_cov_1.574586_g39678_i0 PRJNA385073 39840 254 1.574586 3.99944844 Propionigenium maris 45622 Bacteria Bacteria 409 1.19e-109   NTclustered gi|15029012|emb|AJ307979.1| 45622 g39678 i0 95.686 484.433070866142 255 9 100 2 1 254 2327 2074 Propionigenium maris 23S rRNA gene, strain DSM 9537 T blastn 123046 409 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Propionigenium Propionigenium maris
28275211 28275211 PRJNA385073_P_NODE_33346_length_270_cov_1.192893_g33184_i0 PRJNA385073 33346 270 1.192893 3.2208111 Fusobacteriaceae bacterium 2053555 Bacteria Bacteria 180 3.1299999999999997e-56   NR MBP9597488.1 2053555 g33184 i0 100 0.988888888888889 89 0 98.9 0 268 2 7 95 MBP9597488.1 GNAT family N-acetyltransferase [Fusobacteriaceae bacterium] diamond 267 180 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae   Fusobacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;