RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA385073", tax_kingdom = "Bacillati" and tax_phylum = "Vulcanimicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA385073 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20808036 20808036 PRJNA385073_P_NODE_60117_length_238_cov_2.393939_g59955_i0 PRJNA385073 60117 238 2.393939 5.69757482 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 274 4.19e-69   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g59955 i0 91.133 1038.95378151261 203 17 99 1 37 238 5031801 5032003 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 247271 274 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
29253919 29253919 PRJNA385073_P_NODE_47869_length_247_cov_1.333333_g47707_i0 PRJNA385073 47869 247 1.333333 3.29333251 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 144 2.28e-38   NR MFA5506729.1 3107663 g47707 i0 91.5 0.995951417004049 82 7 99.6 0 246 1 371 452 MFA5506729.1 sigma-70 family RNA polymerase sigma factor [Vulcanimicrobiota bacterium] diamond 246 144 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;