RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA385073", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA385073 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29317266 29317266 PRJNA385073_P_NODE_30629_length_277_cov_1.509804_g30467_i0 PRJNA385073 30629 277 1.509804 4.18215708 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 102 1.42e-23   NR CEO99397.1 37360 g30467 i0 54 0.942238267148014 87 40 94.2 0 15 275 1 87 CEO99397.1 hypothetical protein PBRA_001303 [Plasmodiophora brassicae] diamond 261 102 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29917375 29917375 PRJNA385073_P_NODE_54091_length_244_cov_0.900585_g53929_i0 PRJNA385073 54091 244 0.900585 2.1974274 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 110 7.440000000000001e-26   NR CEO99499.1 37360 g53929 i0 58.8 0.983606557377049 80 33 98.4 0 242 3 2054 2133 CEO99499.1 hypothetical protein PBRA_007232 [Plasmodiophora brassicae] diamond 240 110 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32446652 32446652 PRJNA385073_P_NODE_47779_length_247_cov_1.649425_g47617_i0 PRJNA385073 47779 247 1.649425 4.07407975 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 72.4 1.41e-12   NR SPQ96369.1 37360 g47617 i0 43.9 1.76113360323887 82 45 98.4 1 1 243 106 187 SPQ96369.1 unnamed protein product [Plasmodiophora brassicae] diamond 435 72.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;