contig_metadata
6 rows where bioproject = "PRJNA385073", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15708260 | 15708260 | PRJNA385073_P_NODE_16053_length_344_cov_1.527675_g15892_i0 | PRJNA385073 | 16053 | 344 | 1.527675 | 5.255202 | Victivallales bacterium CCUG 44730 | 2094242 | Bacteria | Bacteria | 169 | 3.1e-37 | NTclustered | gi|1359122976|gb|CP027227.1| | 2094242 | g15892 | i0 | 82.212 | 38.8168604651163 | 208 | 25 | 58 | 9 | 121 | 319 | 708377 | 708173 | Victivallales bacterium CCUG 44730 chromosome, complete genome | blastn | 13353 | 169 | 1 | Bacteria | PVC group | Pseudomonadati | Lentisphaerota | Lentisphaeria | Victivallales | Victivallales bacterium CCUG 44730 | |||
| 27233263 | 27233263 | PRJNA385073_P_NODE_44043_length_250_cov_0.870056_g43881_i0 | PRJNA385073 | 44043 | 250 | 0.870056 | 2.17514 | Victivallis lenta | 2606640 | Bacteria | Bacteria | 160 | 6.879999999999999e-48 | NR | WP_106054054.1 | 2606640 | g43881 | i0 | 97.6 | 0.984 | 82 | 2 | 98.4 | 0 | 248 | 3 | 12 | 93 | WP_106054054.1 orotate phosphoribosyltransferase [Victivallis lenta] | diamond | 246 | 160 | 1 | Bacteria | PVC group | Pseudomonadati | Lentisphaerota | Lentisphaeria | Victivallales | Victivallaceae | Victivallis | Victivallis lenta | |
| 28243590 | 28243590 | PRJNA385073_P_NODE_53846_length_244_cov_0.900585_g53684_i0 | PRJNA385073 | 53846 | 244 | 0.900585 | 2.1974274 | Lentisphaeria bacterium | 2053569 | Bacteria | Bacteria | 130 | 2.12e-35 | NR | MFA6930095.1 | 2053569 | g53684 | i0 | 78.8 | 1.9672131147541 | 80 | 17 | 98.4 | 0 | 244 | 5 | 35 | 114 | MFA6930095.1 ABC transporter substrate-binding protein [Lentisphaeria bacterium] | diamond | 480 | 130 | 1 | Bacteria | PVC group | Pseudomonadati | Lentisphaerota | Lentisphaeria | Lentisphaeria bacterium | ||||
| 30707038 | 30707038 | PRJNA385073_P_NODE_45574_length_249_cov_0.875000_g45412_i0 | PRJNA385073 | 45574 | 249 | 0.875 | 2.17875 | Lentisphaerota bacterium | 1932692 | Bacteria | Bacteria | 121 | 9.81e-30 | NR | NLG00205.1 | 1932692 | g45412 | i0 | 97.6 | 0.987951807228916 | 82 | 2 | 98.8 | 0 | 248 | 3 | 2476 | 2557 | NLG00205.1 hypothetical protein [Lentisphaerota bacterium] | diamond | 246 | 121 | 1 | Bacteria | PVC group | Pseudomonadati | Lentisphaerota | Lentisphaerota bacterium | |||||
| 30959946 | 30959946 | PRJNA385073_P_NODE_46654_length_248_cov_0.880000_g46492_i0 | PRJNA385073 | 46654 | 248 | 0.88 | 2.1824 | Oligosphaera ethanolica | 760260 | Bacteria | Bacteria | 58.5 | 1.08e-7 | NR | WP_307261160.1 | 760260 | g46492 | i0 | 81.3 | 0.387096774193548 | 32 | 6 | 38.7 | 0 | 99 | 4 | 1 | 32 | WP_307261160.1 cellulase family glycosylhydrolase [Oligosphaera ethanolica] | diamond | 96 | 58.5 | 1 | Bacteria | PVC group | Pseudomonadati | Lentisphaerota | Oligosphaeria | Oligosphaerales | Oligosphaeraceae | Oligosphaera | Oligosphaera ethanolica | |
| 32761848 | 32761848 | PRJNA385073_P_NODE_56800_length_242_cov_0.911243_g56638_i0 | PRJNA385073 | 56800 | 242 | 0.911243 | 2.20520806 | Lentisphaerota bacterium | 1932692 | Bacteria | Bacteria | 139 | 4.8e-37 | NR | NLX27012.1 | 1932692 | g56638 | i0 | 86.1 | 0.979338842975207 | 79 | 11 | 97.9 | 0 | 239 | 3 | 1 | 79 | NLX27012.1 IS5 family transposase [Lentisphaerota bacterium] | diamond | 237 | 139 | 1 | Bacteria | PVC group | Pseudomonadati | Lentisphaerota | Lentisphaerota bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;