RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA385073", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA385073 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26917025 26917025 PRJNA385073_P_NODE_62382_length_228_cov_2.658065_g62220_i0 PRJNA385073 62382 228 2.658065 6.0603882 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 70.9 3.81e-12   NR MFA6600554.1 2035772 g62220 i0 49.3 0.960526315789474 73 37 96.1 0 221 3 164 236 MFA6600554.1 UTP--glucose-1-phosphate uridylyltransferase [Candidatus Omnitrophota bacterium] diamond 219 70.9 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31244205 31244205 PRJNA385073_P_NODE_43695_length_250_cov_0.870056_g43533_i0 PRJNA385073 43695 250 0.870056 2.17514 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 107 4.91e-25   NR MFC1708440.1 2035772 g43533 i0 55.7 0.948 79 35 94.8 0 1 237 16 94 MFC1708440.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 237 107 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31655274 31655274 PRJNA385073_P_NODE_59537_length_240_cov_6.203593_g59375_i0 PRJNA385073 59537 240 6.203593 14.8886232 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 74.3 8.47e-14   NR MDP3920901.1 2035772 g59375 i0 48.5 0.825 66 34 82.5 0 239 42 189 254 MDP3920901.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 198 74.3 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32730447 32730447 PRJNA385073_P_NODE_48840_length_247_cov_0.885057_g48678_i0 PRJNA385073 48840 247 0.885057 2.18609079 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 101 1.3799999999999998e-23   NR MBL8012332.1 2035772 g48678 i0 71.9 0.777327935222672 64 18 77.7 0 196 5 110 173 MBL8012332.1 GGDEF domain-containing protein [Candidatus Omnitrophota bacterium] diamond 192 101 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;