RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA385073", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA385073 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13159928 13159928 PRJNA385073_P_NODE_46151_length_248_cov_1.634286_g45989_i0 PRJNA385073 46151 248 1.634286 4.05302928 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 300 7.26e-77   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g45989 i0 88.4 314.66935483871 250 27 100 2 1 248 2529981 2530230 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 78038 300 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
29980444 29980444 PRJNA385073_P_NODE_47951_length_247_cov_0.885057_g47789_i0 PRJNA385073 47951 247 0.885057 2.18609079 Rhodothermales bacterium 2306054 Bacteria Bacteria 137 4.3999999999999996e-38   NR MBE2186063.1 2306054 g47789 i0 87.5 0.97165991902834 80 10 97.2 0 243 4 159 238 MBE2186063.1 nucleoside triphosphate pyrophosphohydrolase [Rhodothermales bacterium] diamond 240 137 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
32035078 32035078 PRJNA385073_P_NODE_58898_length_241_cov_0.916667_g58736_i0 PRJNA385073 58898 241 0.916667 2.20916747 Rhodothermales bacterium 2306054 Bacteria Bacteria 69.3 1.44e-11   NR HYE57186.1 2306054 g58736 i0 72.2 0.672199170124481 54 14 67.2 1 1 162 319 371 HYE57186.1 DUF5915 domain-containing protein [Rhodothermales bacterium] diamond 162 69.3 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;