RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA385073", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA385073 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1681164 1681164 PRJNA385073_P_NODE_53362_length_244_cov_0.900585_g53200_i0 PRJNA385073 53362 244 0.900585 2.1974274 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 230 9.47e-56   NTclustered gi|2621786419|emb|OY782877.1| 2030809 g53200 i0 85.268 67.7254098360656 224 31 91 1 23 244 1907535 1907758 MAG: Candidatus Hydrogenedentes bacterium isolate 28e603e2-5466-4732-bb1a-a7370d5bccbd genome assembly, chromosome: 1 blastn 16525 230 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
14435167 14435167 PRJNA385073_P_NODE_57552_length_242_cov_0.911243_g57390_i0 PRJNA385073 57552 242 0.911243 2.20520806 Bacteria 2 Bacteria Bacteria 171 1.55e-49   NR HQH68446.1 2030809 g57390 i0 100 2.97520661157025 80 0 99.2 0 241 2 299 378 HQH68446.1 phosphomethylpyrimidine synthase ThiC [Candidatus Hydrogenedentota bacterium] diamond 720 171 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
28559631 28559631 PRJNA385073_P_NODE_34807_length_266_cov_1.590674_g34645_i0 PRJNA385073 34807 266 1.590674 4.23119284 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 51.2 4.92e-5   NR MFM1919332.1 2030809 g34645 i0 40.6 1.72556390977444 69 36 77.8 1 236 30 366 429 MFM1919332.1 hypothetical protein [Candidatus Hydrogenedentota bacterium] diamond 459 51.2 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
31212213 31212213 PRJNA385073_P_NODE_58835_length_241_cov_0.916667_g58673_i0 PRJNA385073 58835 241 0.916667 2.20916747 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 127 5.39e-32   NR MBL7649931.1 2030809 g58673 i0 70.5 0.970954356846473 78 23 97.1 0 7 240 561 638 MBL7649931.1 glycogen-debranching protein [Candidatus Hydrogenedentota bacterium] diamond 234 127 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;