RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA385073", tax_clade = "Amoebozoa" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

  • Eukaryota · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA385073 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10609505 10609505 PRJNA385073_P_NODE_25629_length_292_cov_1.406393_g25467_i0 PRJNA385073 25629 292 1.406393 4.10666756 Fuligo septica 159720 Evosea other_Eukaryota 532 7.93e-147   NTclustered gi|37515398|emb|AJ584697.1| 159720 g25467 i0 99.658 62.0684931506849 292 0 100 1 1 292 7730 7440 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 18124 532 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
11279636 11279636 PRJNA385073_P_NODE_60169_length_237_cov_16.634146_g60007_i0 PRJNA385073 60169 237 16.634146 39.42292602 Vannella 95228 Discosea other_Eukaryota 261 3.25e-65   NTclustered gi|284192505|gb|GQ265468.1| 197532 g60007 i0 100 59.168776371308 141 0 59 0 71 211 213 353 Vannella simplex strain CCAP 1589/3 clone A134.2 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 14023 261 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
11884446 11884446 PRJNA385073_P_NODE_26570_length_289_cov_1.185185_g26408_i0 PRJNA385073 26570 289 1.185185 3.42518465 Amoebozoa sp. SZA19 1089205 Root_unresolved Root_unresolved 355 1.82e-93   NTclustered gi|441475832|emb|FN562422.4| 1089205 g26408 i0 88.66 12.8477508650519 291 29 100 4 1 289 328 40 Amoebozoa sp. SZA19 18S rRNA gene, isolate SZA19 blastn 3713 355 1 Eukaryota Amoebozoa             Amoebozoa sp. SZA19
22082252 22082252 PRJNA385073_P_NODE_29938_length_279_cov_1.495146_g29776_i0 PRJNA385073 29938 279 1.495146 4.17145734 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 160 1.26e-44   NR PRP73396.1 1890364 g29776 i0 85.7 31.7311827956989 84 12 90.3 0 254 3 52 135 PRP73396.1 alpha tubulin [Planoprotostelium fungivorum] diamond 8853 160 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28970009 28970009 PRJNA385073_P_NODE_47108_length_248_cov_0.880000_g46946_i0 PRJNA385073 47108 248 0.88 2.1824 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 58.5 1.07e-7   NR XP_004345824.1 1257118 g46946 i0 38 1.91129032258065 79 47 95.6 1 238 2 568 644 XP_004345824.1 uncharacterized protein ACA1_181690 [Acanthamoeba castellanii str. Neff] diamond 474 58.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31687009 31687009 PRJNA385073_P_NODE_55057_length_243_cov_0.905882_g54895_i0 PRJNA385073 55057 243 0.905882 2.20129326 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 94.7 1.46e-20   NR KAH3762400.1 1580589 g54895 i0 52.5 1.97530864197531 80 38 98.8 0 242 3 120 199 KAH3762400.1 serine carboxypeptidase [Pelomyxa schiedti] diamond 480 94.7 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;