RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA385064", tax_phylum = "Deferribacterota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Deferribacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA385064 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2351286 2351286 PRJNA385064_P_NODE_6562_length_167_cov_0.864407_g6437_i0 PRJNA385064 6562 167 0.864407 1.44355969 Mucispirillum 248038 Bacteria Bacteria 167 4.79e-37   NTclustered gi|2211256631|emb|OW091398.1| 248039 g6437 i0 88.489 88.2395209580838 139 15 83 1 22 160 865577 865714 Mucispirillum schaedleri isolate Mucispirillum_schaedleri_DSM104751 genome assembly, chromosome: Mucispirillum_schaedleri_1 blastn 14736 167 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Mucispirillaceae Mucispirillum Mucispirillum schaedleri
8728561 8728561 PRJNA385064_P_NODE_2707_length_271_cov_0.887387_g2582_i0 PRJNA385064 2707 271 0.887387 2.40481877 Denitrovibrio 117999 Bacteria Bacteria 322 1.72e-83   NTclustered gi|290883107|gb|CP001968.1| 522772 g2582 i0 88.192 414.826568265683 271 31 100 1 1 271 2670269 2670000 Denitrovibrio acetiphilus DSM 12809 chromosome, complete genome blastn 112418 322 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Denitrovibrio Denitrovibrio acetiphilus
10004024 10004024 PRJNA385064_P_NODE_6168_length_171_cov_0.860656_g6043_i0 PRJNA385064 6168 171 0.860656 1.47172176 Mucispirillum 248038 Bacteria Bacteria 99 1.81e-16   NTclustered gi|2211256631|emb|OW091398.1| 248039 g6043 i0 86.813 3.19298245614035 91 9 53 3 82 171 866935 866847 Mucispirillum schaedleri isolate Mucispirillum_schaedleri_DSM104751 genome assembly, chromosome: Mucispirillum_schaedleri_1 blastn 546 99 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Mucispirillaceae Mucispirillum Mucispirillum schaedleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;