RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA385064", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA385064 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
405388 405388 PRJNA385064_P_NODE_7061_length_165_cov_0.879310_g6936_i0 PRJNA385064 7061 165 0.87931 1.4508615 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 246 5.9e-61   NTclustered gi|2874253692|emb|OY969418.1| 171953 g6936 i0 93.064 129.127272727273 173 4 100 5 1 165 4232288 4232116 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 21306 246 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
405394 405394 PRJNA385064_P_NODE_7701_length_162_cov_1.353982_g7576_i0 PRJNA385064 7701 162 1.353982 2.19345084 Luteitalea sp. TBR-22 2802971 Bacteria Bacteria 283 4.39e-72   NTclustered gi|2131947417|dbj|AP024452.2| 2802971 g7576 i0 98.148 248.660493827161 162 3 100 0 1 162 642196 642035 Vicinamibacteria bacterium TBR-22 DNA, complete genome blastn 40283 283 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea sp. TBR-22
19531222 19531222 PRJNA385064_P_NODE_6176_length_171_cov_0.827869_g6051_i0 PRJNA385064 6176 171 0.827869 1.41565599 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 243 7.919999999999999e-60   NTclustered gi|2874253710|emb|OY969475.1| 2283092 g6051 i0 94.839 96.140350877193 155 8 91 0 1 155 1821910 1822064 MAG: Pyrinomonadaceae bacterium isolate MFD01916.bin.c.1 genome assembly, chromosome: 1 blastn 16440 243 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;