RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA385064" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA385064 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1680227 1680227 PRJNA385064_P_NODE_8182_length_161_cov_0.910714_g8057_i0 PRJNA385064 8182 161 0.910714 1.46624954 Thermus aquaticus 271 Bacteria Bacteria 298 1.56e-76   NTclustered gi|939575972|gb|CP010822.1| 498848 g8057 i0 100 141.086956521739 161 0 100 0 1 161 45018 45178 Thermus aquaticus Y51MC23, complete genome blastn 22715 298 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
13159093 13159093 PRJNA385064_P_NODE_3311_length_241_cov_1.020833_g3186_i0 PRJNA385064 3311 241 1.020833 2.46020753 Deinococcus radiophilus 32062 Bacteria Bacteria 377 3.1500000000000003e-100   NTclustered gi|2152123021|gb|CP086380.1| 32062 g3186 i0 95.378 286.128630705394 238 9 98 2 5 241 1813799 1813563 Deinococcus radiophilus strain ATCC 27603 chromosome, complete genome blastn 68957 377 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiophilus
13829367 13829367 PRJNA385064_P_NODE_4411_length_205_cov_1.326923_g4286_i0 PRJNA385064 4411 205 1.326923 2.72019215 Truepera 332248 Bacteria Bacteria 250 5.91e-62   NTclustered gi|470486385|ref|NR_076754.1| 332249 g4286 i0 88.725 354.073170731707 204 23 99 0 2 205 305 102 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 72585 252 0.992063492063492 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;